Hb_000548_040

Information

Type rubber biosynthesis
Description Gene Name: CPT1
Location Contig548: 63517-64389
Sequence    

Annotation

kegg
ID pmum:103334495
description dehydrodolichyl diphosphate synthase 6-like
nr
ID BAB92023.1
description cis-prenyltransferase1 [Hevea brasiliensis]
swissprot
ID Q8W3U4
description Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1
trembl
ID Q8L5B7
description Cis-prenyltransferase 4 OS=Hevea brasiliensis GN=Hpt4 PE=2 SV=1
Gene Ontology
ID GO:0050267
description dehydrodolichyl diphosphate synthase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48032: 62256-64674 , PASA_asmbl_48033: 62235-64674 , PASA_asmbl_48034: 62335-64674 , PASA_asmbl_48035: 62215-64674 , PASA_asmbl_48036: 62261-64674 , PASA_asmbl_48037: 45162-64674 , PASA_asmbl_48038: 45162-64674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000548_040 0.0 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
2 Hb_000002_390 0.1271831231 - - DNA binding protein, putative [Ricinus communis]
3 Hb_001425_120 0.1482081302 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
4 Hb_002027_300 0.1506614889 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
5 Hb_012347_010 0.1547267069 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_000957_040 0.1578661078 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_000707_080 0.165254336 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
8 Hb_001140_160 0.166130187 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
9 Hb_004705_030 0.1662467331 - - conserved hypothetical protein [Ricinus communis]
10 Hb_055335_010 0.1667076764 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
11 Hb_010872_060 0.17506832 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
12 Hb_000500_310 0.1752476844 - - -
13 Hb_001631_070 0.1755327423 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_000720_180 0.1764302998 - - -
15 Hb_001315_020 0.1768390996 - - ring finger protein, putative [Ricinus communis]
16 Hb_001141_470 0.1775881807 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
17 Hb_027892_010 0.178765463 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
18 Hb_003018_180 0.1803421211 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
19 Hb_004545_150 0.1812505958 - - PREDICTED: paramyosin [Jatropha curcas]
20 Hb_011457_100 0.1822093495 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000548_040 Hb_000548_040 Hb_000002_390 Hb_000002_390 Hb_000548_040--Hb_000002_390 Hb_001425_120 Hb_001425_120 Hb_000548_040--Hb_001425_120 Hb_002027_300 Hb_002027_300 Hb_000548_040--Hb_002027_300 Hb_012347_010 Hb_012347_010 Hb_000548_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000548_040--Hb_000957_040 Hb_000707_080 Hb_000707_080 Hb_000548_040--Hb_000707_080 Hb_010872_060 Hb_010872_060 Hb_000002_390--Hb_010872_060 Hb_000002_390--Hb_001425_120 Hb_000002_390--Hb_012347_010 Hb_000002_390--Hb_000957_040 Hb_001631_070 Hb_001631_070 Hb_000002_390--Hb_001631_070 Hb_002301_020 Hb_002301_020 Hb_001425_120--Hb_002301_020 Hb_004545_150 Hb_004545_150 Hb_001425_120--Hb_004545_150 Hb_000270_420 Hb_000270_420 Hb_001425_120--Hb_000270_420 Hb_007810_060 Hb_007810_060 Hb_001425_120--Hb_007810_060 Hb_000571_070 Hb_000571_070 Hb_001425_120--Hb_000571_070 Hb_002027_300--Hb_012347_010 Hb_002027_300--Hb_000957_040 Hb_001315_020 Hb_001315_020 Hb_002027_300--Hb_001315_020 Hb_001140_160 Hb_001140_160 Hb_002027_300--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_002027_300--Hb_006120_200 Hb_002027_300--Hb_010872_060 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060 Hb_000707_080--Hb_000762_020 Hb_000920_140 Hb_000920_140 Hb_000707_080--Hb_000920_140 Hb_000707_080--Hb_001140_160 Hb_000707_080--Hb_001631_070 Hb_000707_080--Hb_000957_040 Hb_000707_080--Hb_012347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1220.24 70.2946 0.805083 8.82687 279.025 506.114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
831.03 286.304 1010.72 55.5248 1.14967

CAGE analysis