Hb_000548_060

Information

Type -
Description -
Location Contig548: 97012-100488
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12670g
description POPTRDRAFT_231983; hypothetical protein
nr
ID XP_012075689.1
description PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
swissprot
ID P43394
description Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1
trembl
ID A0A067KRS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09278 PE=4 SV=1
Gene Ontology
ID GO:0009570
description fruit protein pkiwi502-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48048: 97071-100315 , PASA_asmbl_48049: 98598-98767 , PASA_asmbl_48050: 100885-105149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000548_060 0.0 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
2 Hb_014361_110 0.0826091371 - - RNA binding protein, putative [Ricinus communis]
3 Hb_036790_120 0.0994995627 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
4 Hb_007426_170 0.1038943626 transcription factor TF Family: TCP -
5 Hb_010128_020 0.1072051664 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
6 Hb_001959_060 0.107781541 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
7 Hb_003029_020 0.1084956114 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_003171_030 0.1089373767 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
9 Hb_006829_080 0.1093328491 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
10 Hb_001343_020 0.1125113881 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000684_430 0.115135353 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
12 Hb_001649_030 0.1174664599 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
13 Hb_000032_390 0.1182039713 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
14 Hb_002232_380 0.1205814169 - - malate dehydrogenase, putative [Ricinus communis]
15 Hb_002928_030 0.1206769449 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_000152_480 0.1209281711 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
17 Hb_000112_060 0.1210328313 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
18 Hb_000537_070 0.1262618592 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
19 Hb_025194_090 0.1284395825 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
20 Hb_005116_100 0.1297081435 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]

Gene co-expression network

sample Hb_000548_060 Hb_000548_060 Hb_014361_110 Hb_014361_110 Hb_000548_060--Hb_014361_110 Hb_036790_120 Hb_036790_120 Hb_000548_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000548_060--Hb_007426_170 Hb_010128_020 Hb_010128_020 Hb_000548_060--Hb_010128_020 Hb_001959_060 Hb_001959_060 Hb_000548_060--Hb_001959_060 Hb_003029_020 Hb_003029_020 Hb_000548_060--Hb_003029_020 Hb_000803_240 Hb_000803_240 Hb_014361_110--Hb_000803_240 Hb_000684_430 Hb_000684_430 Hb_014361_110--Hb_000684_430 Hb_018043_020 Hb_018043_020 Hb_014361_110--Hb_018043_020 Hb_001723_030 Hb_001723_030 Hb_014361_110--Hb_001723_030 Hb_005116_100 Hb_005116_100 Hb_014361_110--Hb_005116_100 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_036790_120--Hb_010128_020 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_000112_060 Hb_000112_060 Hb_007426_170--Hb_000112_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_010128_020--Hb_003029_020 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_010128_020--Hb_000112_060 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_025194_090 Hb_025194_090 Hb_003029_020--Hb_025194_090 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15803 15.0366 47.251 13.7064 7.09498 7.29407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.33789 16.9775 8.64619 9.72758 88.0056

CAGE analysis