Hb_000549_040

Information

Type -
Description -
Location Contig549: 46757-48913
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14820g
description POPTRDRAFT_895682; hypothetical protein
nr
ID XP_012078983.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LTV8
description Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
trembl
ID B9I6K3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000549_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
2 Hb_031910_020 0.0841020366 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
3 Hb_004117_260 0.0867855151 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004993_060 0.0915727372 - - -
5 Hb_000367_260 0.1094420711 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
6 Hb_001314_070 0.1094475054 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005228_070 0.1099035524 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
8 Hb_050622_050 0.1105933765 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
9 Hb_005188_020 0.1120681038 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
10 Hb_000840_250 0.112418931 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
11 Hb_003657_010 0.112475848 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000393_020 0.1134353231 - - lipid binding protein, putative [Ricinus communis]
13 Hb_000197_250 0.1136864101 - - Chaperone protein dnaJ, putative [Ricinus communis]
14 Hb_002217_020 0.1150930995 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
15 Hb_022256_020 0.1153122896 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
16 Hb_086639_010 0.1169077742 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000297_010 0.1173418788 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
18 Hb_000406_140 0.1193572634 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001504_330 0.1195373375 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
20 Hb_005545_100 0.1201566836 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000549_040 Hb_000549_040 Hb_031910_020 Hb_031910_020 Hb_000549_040--Hb_031910_020 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_004993_060 Hb_004993_060 Hb_000549_040--Hb_004993_060 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_001314_070 Hb_001314_070 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070 Hb_031910_020--Hb_004993_060 Hb_000603_080 Hb_000603_080 Hb_031910_020--Hb_000603_080 Hb_031910_020--Hb_001314_070 Hb_001504_330 Hb_001504_330 Hb_031910_020--Hb_001504_330 Hb_002799_040 Hb_002799_040 Hb_031910_020--Hb_002799_040 Hb_000393_020 Hb_000393_020 Hb_004117_260--Hb_000393_020 Hb_003657_010 Hb_003657_010 Hb_004117_260--Hb_003657_010 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_004117_260--Hb_001314_070 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_000367_260--Hb_001504_330 Hb_000367_260--Hb_000603_080 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_001314_070--Hb_000603_080 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260 Hb_003938_190 Hb_003938_190 Hb_005228_070--Hb_003938_190 Hb_000039_160 Hb_000039_160 Hb_005228_070--Hb_000039_160 Hb_012325_020 Hb_012325_020 Hb_005228_070--Hb_012325_020 Hb_168319_030 Hb_168319_030 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.760631 1.86358 1.20499 1.20419 0.714427 1.02524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.851181 1.76423 3.25894 1.50672 1.00329

CAGE analysis