Hb_000552_100

Information

Type -
Description -
Location Contig552: 80765-82064
Sequence    

Annotation

kegg
ID cic:CICLE_v10015897mg
description hypothetical protein
nr
ID XP_012081497.1
description PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
swissprot
ID Q93XW5
description Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1
trembl
ID A0A067K4G6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48296: 80722-82065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000552_100 0.0 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
2 Hb_008749_030 0.1074877394 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
3 Hb_119600_050 0.1307299419 - - sugar transporter, putative [Ricinus communis]
4 Hb_000723_010 0.1346795585 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000800_110 0.1350456266 - - NAD dehydrogenase, putative [Ricinus communis]
6 Hb_114151_020 0.1366035363 - - glucan water dikinase 2 [Manihot esculenta]
7 Hb_001437_190 0.1385094781 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000099_030 0.140910552 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
9 Hb_000674_010 0.141286511 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
10 Hb_001442_060 0.1426920979 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
11 Hb_004143_160 0.14290388 - - SAB, putative [Ricinus communis]
12 Hb_000950_060 0.1451718486 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
13 Hb_041828_010 0.1469434456 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
14 Hb_000175_120 0.147873836 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
15 Hb_001124_050 0.1491721416 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
16 Hb_000575_100 0.1517068302 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
17 Hb_007123_050 0.1529165344 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
18 Hb_003927_010 0.1531791546 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
19 Hb_000086_690 0.1536527636 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
20 Hb_001989_050 0.1541102603 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000552_100 Hb_000552_100 Hb_008749_030 Hb_008749_030 Hb_000552_100--Hb_008749_030 Hb_119600_050 Hb_119600_050 Hb_000552_100--Hb_119600_050 Hb_000723_010 Hb_000723_010 Hb_000552_100--Hb_000723_010 Hb_000800_110 Hb_000800_110 Hb_000552_100--Hb_000800_110 Hb_114151_020 Hb_114151_020 Hb_000552_100--Hb_114151_020 Hb_001437_190 Hb_001437_190 Hb_000552_100--Hb_001437_190 Hb_001205_110 Hb_001205_110 Hb_008749_030--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_008749_030--Hb_012239_030 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_003632_030 Hb_003632_030 Hb_119600_050--Hb_003632_030 Hb_001411_030 Hb_001411_030 Hb_119600_050--Hb_001411_030 Hb_007123_050 Hb_007123_050 Hb_119600_050--Hb_007123_050 Hb_000284_230 Hb_000284_230 Hb_119600_050--Hb_000284_230 Hb_000608_300 Hb_000608_300 Hb_119600_050--Hb_000608_300 Hb_006355_020 Hb_006355_020 Hb_119600_050--Hb_006355_020 Hb_069619_010 Hb_069619_010 Hb_000723_010--Hb_069619_010 Hb_001497_060 Hb_001497_060 Hb_000723_010--Hb_001497_060 Hb_000674_010 Hb_000674_010 Hb_000723_010--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_000723_010--Hb_003058_200 Hb_075315_010 Hb_075315_010 Hb_000723_010--Hb_075315_010 Hb_020805_180 Hb_020805_180 Hb_000723_010--Hb_020805_180 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_006031_010 Hb_006031_010 Hb_114151_020--Hb_006031_010 Hb_114151_020--Hb_000035_010 Hb_000189_320 Hb_000189_320 Hb_114151_020--Hb_000189_320 Hb_009486_090 Hb_009486_090 Hb_114151_020--Hb_009486_090 Hb_000196_060 Hb_000196_060 Hb_114151_020--Hb_000196_060 Hb_004327_040 Hb_004327_040 Hb_114151_020--Hb_004327_040 Hb_002284_250 Hb_002284_250 Hb_001437_190--Hb_002284_250 Hb_000237_050 Hb_000237_050 Hb_001437_190--Hb_000237_050 Hb_000237_040 Hb_000237_040 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_000062_020 Hb_000062_020 Hb_001437_190--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_001437_190--Hb_001821_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4456 65.4938 15.7917 73.5473 43.0485 72.8195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.1938 11.1533 11.959 90.4987 94.1267

CAGE analysis