Hb_000554_010

Information

Type -
Description -
Location Contig554: 14916-21107
Sequence    

Annotation

kegg
ID rcu:RCOM_0302740
description transporter, putative
nr
ID XP_002531776.1
description transporter, putative [Ricinus communis]
swissprot
ID Q501H5
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 OS=Arabidopsis thaliana GN=SFH13 PE=2 SV=1
trembl
ID B9T0K7
description Transporter, putative OS=Ricinus communis GN=RCOM_0302740 PE=4 SV=1
Gene Ontology
ID GO:0010228
description phosphatidylinositol phosphatidylcholine transfer protein sfh13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48413: 14347-14535 , PASA_asmbl_48414: 19219-19467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000554_010 0.0 - - transporter, putative [Ricinus communis]
2 Hb_004007_160 0.0830522864 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
3 Hb_004705_040 0.0894858652 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
4 Hb_004375_130 0.11011215 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_000281_110 0.1108223689 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
6 Hb_007479_050 0.1196569862 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
7 Hb_000649_050 0.1211946022 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
8 Hb_000025_090 0.1289918247 - - tubulin beta chain, putative [Ricinus communis]
9 Hb_003376_050 0.1324308748 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_002681_050 0.1346897903 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_000307_140 0.1351163792 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
12 Hb_002615_040 0.1362255729 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
13 Hb_002518_030 0.1365223111 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
14 Hb_004052_040 0.1387957921 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
15 Hb_000521_160 0.1389103196 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000956_130 0.1408408463 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
17 Hb_000012_430 0.1415049805 - - calcineurin B, putative [Ricinus communis]
18 Hb_000299_040 0.1415856572 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
19 Hb_000083_250 0.1426923005 - - ring finger protein, putative [Ricinus communis]
20 Hb_001348_180 0.147639059 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000554_010 Hb_000554_010 Hb_004007_160 Hb_004007_160 Hb_000554_010--Hb_004007_160 Hb_004705_040 Hb_004705_040 Hb_000554_010--Hb_004705_040 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_007479_050 Hb_007479_050 Hb_000554_010--Hb_007479_050 Hb_000649_050 Hb_000649_050 Hb_000554_010--Hb_000649_050 Hb_004007_160--Hb_004705_040 Hb_000956_130 Hb_000956_130 Hb_004007_160--Hb_000956_130 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_004705_040--Hb_000299_040 Hb_004705_040--Hb_000956_130 Hb_004705_040--Hb_000649_050 Hb_004705_040--Hb_007479_050 Hb_003376_050 Hb_003376_050 Hb_004375_130--Hb_003376_050 Hb_002769_020 Hb_002769_020 Hb_004375_130--Hb_002769_020 Hb_000096_080 Hb_000096_080 Hb_004375_130--Hb_000096_080 Hb_000392_370 Hb_000392_370 Hb_004375_130--Hb_000392_370 Hb_004375_130--Hb_004705_040 Hb_003206_070 Hb_003206_070 Hb_000281_110--Hb_003206_070 Hb_003032_010 Hb_003032_010 Hb_000281_110--Hb_003032_010 Hb_001454_130 Hb_001454_130 Hb_000281_110--Hb_001454_130 Hb_001633_130 Hb_001633_130 Hb_000281_110--Hb_001633_130 Hb_000169_090 Hb_000169_090 Hb_000281_110--Hb_000169_090 Hb_011316_100 Hb_011316_100 Hb_007479_050--Hb_011316_100 Hb_000307_140 Hb_000307_140 Hb_007479_050--Hb_000307_140 Hb_002518_030 Hb_002518_030 Hb_007479_050--Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_007479_050--Hb_000170_200 Hb_003641_050 Hb_003641_050 Hb_000649_050--Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_001100_050 Hb_001100_050 Hb_000649_050--Hb_001100_050 Hb_000649_050--Hb_003376_050 Hb_007477_080 Hb_007477_080 Hb_000649_050--Hb_007477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6333 1.91657 4.94594 11.5966 5.97264 9.44576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2152 4.69379 6.40283 1.52626 4.89824

CAGE analysis