Hb_000554_020

Information

Type -
Description -
Location Contig554: 62911-65347
Sequence    

Annotation

kegg
ID vvi:100243474
description pentatricopeptide repeat-containing protein At4g21065
nr
ID XP_012086143.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
swissprot
ID Q0WQW5
description Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2
trembl
ID E6NUE8
description JMS10C05.1 protein OS=Jatropha curcas GN=JMS10C05.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48417: 64861-65083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000554_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
2 Hb_000406_220 0.0682493641 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
3 Hb_006332_020 0.0712651558 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
4 Hb_000754_060 0.0714417592 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
5 Hb_001671_020 0.0719933973 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
6 Hb_028872_140 0.0728168895 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
7 Hb_000032_290 0.0749715827 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
8 Hb_007951_050 0.0756946559 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000022_250 0.0757612777 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
10 Hb_005062_070 0.0765051284 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
11 Hb_006949_050 0.0774180311 - - unknown [Lotus japonicus]
12 Hb_002375_020 0.0779543017 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
13 Hb_000203_160 0.0779784269 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
14 Hb_000483_350 0.0786490482 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
15 Hb_000787_110 0.0789016365 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
16 Hb_000567_260 0.0794933544 - - BnaA09g41440D [Brassica napus]
17 Hb_001138_050 0.0801170241 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
18 Hb_006949_040 0.0809839976 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_010710_110 0.0823692053 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
20 Hb_001488_330 0.0824126384 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000554_020 Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_181235_010 Hb_181235_010 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_000032_290--Hb_181235_010 Hb_000032_290--Hb_006332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.66323 5.6894 1.65157 2.22678 6.64355 9.73152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.17165 9.18314 9.52086 3.72332 2.3389

CAGE analysis