Hb_000554_030

Information

Type -
Description -
Location Contig554: 65441-72634
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05130g
description POPTRDRAFT_560522; hypothetical protein
nr
ID XP_012086140.1
description PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94A08
description Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2
trembl
ID E6NUE9
description JMS10C05.2 protein OS=Jatropha curcas GN=JMS10C05.2 PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable galactinol--sucrose galactosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48418: 65536-69806 , PASA_asmbl_48419: 66991-72558 , PASA_asmbl_48421: 70293-70544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000554_030 0.0 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
2 Hb_005539_260 0.1790756075 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
3 Hb_000398_050 0.2272657652 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
4 Hb_007975_050 0.2379150128 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
5 Hb_000856_050 0.24688574 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
6 Hb_002660_060 0.2494367062 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
7 Hb_002527_050 0.2571629123 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
8 Hb_026198_030 0.2577749452 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
9 Hb_004846_160 0.2596653508 - - -
10 Hb_023344_060 0.2624118144 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
11 Hb_023344_070 0.2658077307 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_025708_020 0.27034627 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000062_640 0.2722088753 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
14 Hb_000028_340 0.2732349368 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
15 Hb_003327_070 0.2735152596 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
16 Hb_000649_150 0.2740492642 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]
17 Hb_000207_290 0.2753042999 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
18 Hb_002597_020 0.2776666101 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_009193_100 0.280395765 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
20 Hb_000980_070 0.2819153966 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]

Gene co-expression network

sample Hb_000554_030 Hb_000554_030 Hb_005539_260 Hb_005539_260 Hb_000554_030--Hb_005539_260 Hb_000398_050 Hb_000398_050 Hb_000554_030--Hb_000398_050 Hb_007975_050 Hb_007975_050 Hb_000554_030--Hb_007975_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_000094_120 Hb_000094_120 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_002027_030 Hb_002027_030 Hb_005539_260--Hb_002027_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080 Hb_000028_500 Hb_000028_500 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_026198_030 Hb_026198_030 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070 Hb_007975_050--Hb_002027_030 Hb_004162_060 Hb_004162_060 Hb_007975_050--Hb_004162_060 Hb_000086_290 Hb_000086_290 Hb_007975_050--Hb_000086_290 Hb_007975_050--Hb_005539_260 Hb_015778_030 Hb_015778_030 Hb_007975_050--Hb_015778_030 Hb_030944_010 Hb_030944_010 Hb_000856_050--Hb_030944_010 Hb_105660_010 Hb_105660_010 Hb_000856_050--Hb_105660_010 Hb_000172_050 Hb_000172_050 Hb_000856_050--Hb_000172_050 Hb_004453_180 Hb_004453_180 Hb_000856_050--Hb_004453_180 Hb_000856_050--Hb_005539_260 Hb_006925_070 Hb_006925_070 Hb_000856_050--Hb_006925_070 Hb_002805_020 Hb_002805_020 Hb_002660_060--Hb_002805_020 Hb_000671_160 Hb_000671_160 Hb_002660_060--Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000649_180 Hb_000649_180 Hb_002527_050--Hb_000649_180 Hb_012565_040 Hb_012565_040 Hb_002527_050--Hb_012565_040 Hb_000011_420 Hb_000011_420 Hb_002527_050--Hb_000011_420 Hb_002170_020 Hb_002170_020 Hb_002527_050--Hb_002170_020 Hb_002291_020 Hb_002291_020 Hb_002527_050--Hb_002291_020 Hb_009193_100 Hb_009193_100 Hb_002527_050--Hb_009193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162077 39.0772 7.6965 39.0758 4.58947 0.565339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.898659 3.90685 43.5884 34.7508 7.51739

CAGE analysis