Hb_000555_020

Information

Type -
Description -
Location Contig555: 35248-39855
Sequence    

Annotation

kegg
ID rcu:RCOM_0623480
description APO protein 2, chloroplast precursor, putative
nr
ID XP_002529388.1
description APO protein 2, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q8W4A5
description APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1
trembl
ID B9STR9
description APO protein 2, chloroplast, putative OS=Ricinus communis GN=RCOM_0623480 PE=4 SV=1
Gene Ontology
ID GO:0003723
description apo protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48473: 35234-39860 , PASA_asmbl_48475: 37255-39807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000555_020 0.0 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
2 Hb_000107_340 0.0595826143 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
3 Hb_005235_070 0.067095357 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
4 Hb_002150_140 0.0768037056 - - PREDICTED: girdin-like [Jatropha curcas]
5 Hb_102948_010 0.0805669436 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
6 Hb_114310_070 0.0848870157 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
7 Hb_000311_120 0.0879178859 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
8 Hb_001430_020 0.0882776524 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_003529_140 0.0914228987 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
10 Hb_033312_010 0.092133923 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002107_050 0.092808264 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_002218_020 0.0948414748 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
13 Hb_003883_010 0.0951416501 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_002600_070 0.0954283188 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
15 Hb_000748_090 0.0962749739 - - glucose inhibited division protein A, putative [Ricinus communis]
16 Hb_010174_090 0.0963862391 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
17 Hb_006569_040 0.0990604195 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
18 Hb_000589_110 0.0994765793 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
19 Hb_087313_010 0.1019235993 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011861_050 0.1040130047 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000555_020 Hb_000555_020 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_005235_070 Hb_005235_070 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_102948_010 Hb_102948_010 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120 Hb_000107_340--Hb_005235_070 Hb_000035_090 Hb_000035_090 Hb_000107_340--Hb_000035_090 Hb_000107_340--Hb_102948_010 Hb_003747_120 Hb_003747_120 Hb_000107_340--Hb_003747_120 Hb_022378_010 Hb_022378_010 Hb_000107_340--Hb_022378_010 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_005235_070--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_002150_140--Hb_114310_070 Hb_005496_050 Hb_005496_050 Hb_002150_140--Hb_005496_050 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010 Hb_102948_010--Hb_002218_020 Hb_001430_020 Hb_001430_020 Hb_102948_010--Hb_001430_020 Hb_102948_010--Hb_087313_010 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_033312_010 Hb_033312_010 Hb_114310_070--Hb_033312_010 Hb_000237_200 Hb_000237_200 Hb_114310_070--Hb_000237_200 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_002876_300 Hb_002876_300 Hb_114310_070--Hb_002876_300 Hb_010174_090 Hb_010174_090 Hb_000311_120--Hb_010174_090 Hb_006787_090 Hb_006787_090 Hb_000311_120--Hb_006787_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_000311_120--Hb_033312_010 Hb_003529_140 Hb_003529_140 Hb_000311_120--Hb_003529_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1937 18.1134 30.5182 15.1384 11.6542 10.0142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55063 13.7576 9.05843 7.21672 37.9069

CAGE analysis