Hb_000555_100

Information

Type -
Description -
Location Contig555: 165751-182606
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17840g
description POPTRDRAFT_247435; DNA replication helicase family protein
nr
ID KDP28918.1
description hypothetical protein JCGZ_14689 [Jatropha curcas]
swissprot
ID Q8QHA5
description DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1
trembl
ID A0A067K1J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14689 PE=4 SV=1
Gene Ontology
ID GO:0004386
description dna replication atp-dependent helicase nuclease dna2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48476: 166069-166651 , PASA_asmbl_48477: 166775-167444 , PASA_asmbl_48478: 166787-167204 , PASA_asmbl_48479: 167565-169784 , PASA_asmbl_48480: 170747-171105 , PASA_asmbl_48481: 171291-171660 , PASA_asmbl_48482: 180032-182482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000555_100 0.0 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
2 Hb_005588_060 0.0880487143 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
3 Hb_168893_020 0.0894220671 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
4 Hb_007257_060 0.0930025662 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
5 Hb_001369_250 0.0954221784 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
6 Hb_000167_010 0.0962006709 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003058_120 0.0990088371 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
8 Hb_006538_090 0.1023544869 - - PREDICTED: IST1 homolog [Jatropha curcas]
9 Hb_023001_040 0.1023816352 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
10 Hb_000347_450 0.1031070859 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
11 Hb_000008_420 0.1043921053 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
12 Hb_001301_110 0.1055452044 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
13 Hb_010174_150 0.1072780773 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_004109_340 0.1088096004 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
15 Hb_002357_060 0.1092496523 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
16 Hb_002439_010 0.1100934771 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
17 Hb_006452_100 0.1111486308 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
18 Hb_004781_010 0.112569474 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
19 Hb_000367_090 0.1132715137 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
20 Hb_006060_020 0.1134061947 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000555_100 Hb_000555_100 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_168893_020 Hb_168893_020 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_001369_250 Hb_001369_250 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000555_100--Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_006538_090 Hb_006538_090 Hb_168893_020--Hb_006538_090 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_012092_050 Hb_012092_050 Hb_007257_060--Hb_012092_050 Hb_001300_280 Hb_001300_280 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_000008_420 Hb_000008_420 Hb_007257_060--Hb_000008_420 Hb_006588_060 Hb_006588_060 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_000167_010--Hb_023001_040 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805666 1.06735 1.3597 1.74706 0.512283 0.633642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31754 1.71047 0.625872 2.1753 0.779634

CAGE analysis