Hb_000556_010

Information

Type -
Description -
Location Contig556: 3054-3266
Sequence    

Annotation

kegg
ID rcu:RCOM_1612770
description glycerate dehydrogenase, putative (EC:1.1.1.26)
nr
ID XP_002511757.1
description glycerate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9LE33
description Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1
trembl
ID B9RDG8
description Glycerate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1612770 PE=3 SV=1
Gene Ontology
ID GO:0016779
description glyoxylate hydroxypyruvate reductase hpr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_010 0.0 - - glycerate dehydrogenase, putative [Ricinus communis]
2 Hb_006693_040 0.132511634 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
3 Hb_001004_080 0.1686963511 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
4 Hb_000193_210 0.1699775227 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
5 Hb_002182_020 0.1732292342 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_011310_040 0.1764614981 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
7 Hb_000856_400 0.1777117573 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
8 Hb_002596_080 0.1814564898 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
9 Hb_009913_040 0.1817892827 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_000189_440 0.1845815712 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
11 Hb_007192_020 0.1865373478 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
12 Hb_034726_010 0.1883061497 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_001711_080 0.1895760207 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
14 Hb_001584_130 0.1896730428 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
15 Hb_001369_010 0.1927920831 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_001789_100 0.1982952342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000300_480 0.1984646505 - - hypothetical protein RCOM_1321910 [Ricinus communis]
18 Hb_000246_130 0.1996217469 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_000350_030 0.1998303 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
20 Hb_000820_110 0.1998555231 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000556_010 Hb_000556_010 Hb_006693_040 Hb_006693_040 Hb_000556_010--Hb_006693_040 Hb_001004_080 Hb_001004_080 Hb_000556_010--Hb_001004_080 Hb_000193_210 Hb_000193_210 Hb_000556_010--Hb_000193_210 Hb_002182_020 Hb_002182_020 Hb_000556_010--Hb_002182_020 Hb_011310_040 Hb_011310_040 Hb_000556_010--Hb_011310_040 Hb_000856_400 Hb_000856_400 Hb_000556_010--Hb_000856_400 Hb_001819_020 Hb_001819_020 Hb_006693_040--Hb_001819_020 Hb_001584_280 Hb_001584_280 Hb_006693_040--Hb_001584_280 Hb_006693_040--Hb_000193_210 Hb_006693_040--Hb_000856_400 Hb_020805_040 Hb_020805_040 Hb_006693_040--Hb_020805_040 Hb_001584_130 Hb_001584_130 Hb_001004_080--Hb_001584_130 Hb_012339_010 Hb_012339_010 Hb_001004_080--Hb_012339_010 Hb_009913_040 Hb_009913_040 Hb_001004_080--Hb_009913_040 Hb_003994_300 Hb_003994_300 Hb_001004_080--Hb_003994_300 Hb_000445_150 Hb_000445_150 Hb_001004_080--Hb_000445_150 Hb_001004_080--Hb_011310_040 Hb_000820_110 Hb_000820_110 Hb_000193_210--Hb_000820_110 Hb_000077_100 Hb_000077_100 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_000096_190 Hb_000096_190 Hb_002182_020--Hb_000096_190 Hb_002759_120 Hb_002759_120 Hb_002182_020--Hb_002759_120 Hb_000749_020 Hb_000749_020 Hb_002182_020--Hb_000749_020 Hb_000049_160 Hb_000049_160 Hb_002182_020--Hb_000049_160 Hb_000086_210 Hb_000086_210 Hb_002182_020--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_002182_020--Hb_005563_010 Hb_002596_080 Hb_002596_080 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23303 6.1938 37.3449 97.9247 4.12653 21.7924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7985 9.85197 3.03713 2.0967 60.2723

CAGE analysis