Hb_000556_020

Information

Type -
Description -
Location Contig556: 5594-11207
Sequence    

Annotation

kegg
ID rcu:RCOM_1612650
description poly(A) polymerase cid, putative
nr
ID XP_012083529.1
description PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
swissprot
ID O74326
description Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1
trembl
ID E6NU32
description JHL05D22.13 protein OS=Jatropha curcas GN=JHL05D22.13 PE=4 SV=1
Gene Ontology
ID GO:0016740
description poly polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48497: 5752-11078 , PASA_asmbl_48498: 7341-11078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_020 0.0 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
2 Hb_003728_030 0.0683141725 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
3 Hb_000483_360 0.0736634234 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
4 Hb_001811_150 0.0866658772 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
5 Hb_016657_010 0.0916092146 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
6 Hb_000879_140 0.0919024934 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
7 Hb_000522_090 0.0952267395 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
8 Hb_000803_300 0.0966431664 - - nuclear movement protein nudc, putative [Ricinus communis]
9 Hb_003602_040 0.097894377 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_000012_090 0.0995087163 - - 3'-5' exonuclease, putative [Ricinus communis]
11 Hb_004310_060 0.1000351603 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000300_280 0.1006166623 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
13 Hb_002030_030 0.1017270247 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
14 Hb_005215_030 0.1017637241 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
15 Hb_006663_100 0.1022472287 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
16 Hb_005539_030 0.1035833969 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_005977_090 0.1037740054 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
18 Hb_000703_080 0.1045711218 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
19 Hb_009118_010 0.1048209486 - - methionine aminopeptidase, putative [Ricinus communis]
20 Hb_005375_030 0.1048900495 - - DEAD/DEAH box helicase factory [Malus domestica]

Gene co-expression network

sample Hb_000556_020 Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_000556_020--Hb_003728_030 Hb_000483_360 Hb_000483_360 Hb_000556_020--Hb_000483_360 Hb_001811_150 Hb_001811_150 Hb_000556_020--Hb_001811_150 Hb_016657_010 Hb_016657_010 Hb_000556_020--Hb_016657_010 Hb_000879_140 Hb_000879_140 Hb_000556_020--Hb_000879_140 Hb_000522_090 Hb_000522_090 Hb_000556_020--Hb_000522_090 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_003728_030--Hb_000483_360 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_003728_030--Hb_001811_150 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000483_360--Hb_000300_280 Hb_003728_020 Hb_003728_020 Hb_001811_150--Hb_003728_020 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010 Hb_000046_440 Hb_000046_440 Hb_016657_010--Hb_000046_440 Hb_000260_220 Hb_000260_220 Hb_016657_010--Hb_000260_220 Hb_007317_190 Hb_007317_190 Hb_016657_010--Hb_007317_190 Hb_016657_010--Hb_000522_090 Hb_005977_090 Hb_005977_090 Hb_016657_010--Hb_005977_090 Hb_000879_140--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000879_140--Hb_004310_060 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_000522_090--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000522_090--Hb_002097_090 Hb_005245_130 Hb_005245_130 Hb_000522_090--Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_000522_090--Hb_004934_090 Hb_000522_090--Hb_005977_090 Hb_000522_090--Hb_002030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.734 81.973 29.8361 32.1354 213.948 188.604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
226.619 72.3379 118.141 104.093 46.151

CAGE analysis