Hb_000556_060

Information

Type -
Description -
Location Contig556: 41413-41877
Sequence    

Annotation

kegg
ID egr:104423537
description carboxylesterase 1-like
nr
ID EAZ43560.1
description hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
swissprot
ID Q9US38
description AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.03 PE=3 SV=1
trembl
ID M0ZGN9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000139 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_060 0.0 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
2 Hb_009847_010 0.0281716735 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
3 Hb_000847_090 0.0476493769 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
4 Hb_024071_030 0.0558740287 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
5 Hb_007044_240 0.0584767314 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
6 Hb_009663_020 0.0674648408 - - -
7 Hb_007120_120 0.0699818069 - - protein binding protein, putative [Ricinus communis]
8 Hb_006711_030 0.0721694105 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
9 Hb_002307_140 0.0736616496 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
10 Hb_132840_190 0.0751618998 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
11 Hb_007221_020 0.0754450517 - - FAD-binding domain-containing family protein [Populus trichocarpa]
12 Hb_031022_030 0.0787633552 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
13 Hb_000375_220 0.0830781235 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
14 Hb_000676_360 0.0839136903 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
15 Hb_007218_050 0.0858588456 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000127_240 0.0866027882 - - SAUR39 [Populus tomentosa]
17 Hb_001652_100 0.0888028805 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_000321_110 0.0923385454 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
19 Hb_004453_160 0.0940000094 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007922_030 0.0944639564 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]

Gene co-expression network

sample Hb_000556_060 Hb_000556_060 Hb_009847_010 Hb_009847_010 Hb_000556_060--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000556_060--Hb_000847_090 Hb_024071_030 Hb_024071_030 Hb_000556_060--Hb_024071_030 Hb_007044_240 Hb_007044_240 Hb_000556_060--Hb_007044_240 Hb_009663_020 Hb_009663_020 Hb_000556_060--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_000556_060--Hb_007120_120 Hb_009847_010--Hb_000847_090 Hb_009847_010--Hb_024071_030 Hb_009847_010--Hb_007044_240 Hb_000127_240 Hb_000127_240 Hb_009847_010--Hb_000127_240 Hb_000375_220 Hb_000375_220 Hb_009847_010--Hb_000375_220 Hb_000847_090--Hb_000375_220 Hb_000847_090--Hb_007044_240 Hb_002307_140 Hb_002307_140 Hb_000847_090--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_000847_090--Hb_006711_030 Hb_024071_030--Hb_009663_020 Hb_024071_030--Hb_007120_120 Hb_163566_010 Hb_163566_010 Hb_024071_030--Hb_163566_010 Hb_000321_110 Hb_000321_110 Hb_024071_030--Hb_000321_110 Hb_007044_240--Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_007044_240--Hb_007218_050 Hb_007044_240--Hb_006711_030 Hb_180535_010 Hb_180535_010 Hb_007044_240--Hb_180535_010 Hb_009663_020--Hb_007120_120 Hb_009663_020--Hb_163566_010 Hb_016734_100 Hb_016734_100 Hb_009663_020--Hb_016734_100 Hb_001652_100 Hb_001652_100 Hb_009663_020--Hb_001652_100 Hb_009663_020--Hb_000321_110 Hb_007120_120--Hb_016734_100 Hb_007120_120--Hb_001652_100 Hb_007120_120--Hb_163566_010 Hb_001642_020 Hb_001642_020 Hb_007120_120--Hb_001642_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 126.201 101.281 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151618 0 0 0.0997727 54.926

CAGE analysis