Hb_000556_080

Information

Type -
Description -
Location Contig556: 51845-63918
Sequence    

Annotation

kegg
ID pxb:103967724
description synaptotagmin-5
nr
ID XP_009379292.1
description PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
swissprot
ID A0JJX5
description Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
trembl
ID A0A059CJ19
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02433 PE=4 SV=1
Gene Ontology
ID GO:0004622
description synaptotagmin-5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48502: 51876-63638 , PASA_asmbl_48503: 54665-54799 , PASA_asmbl_48504: 58315-58580
cDNA
(Sanger)
(ID:Location)		 001_C05.ab1: 53878-63487 , 038_O09.ab1: 53880-63517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_080 0.0 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
2 Hb_182026_020 0.0764988495 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
3 Hb_001135_160 0.0799783214 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
4 Hb_001439_120 0.0839727196 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011224_080 0.0848634512 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_010638_020 0.0875683607 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
7 Hb_012340_010 0.0910253671 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
8 Hb_073171_110 0.0937418464 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
9 Hb_010174_130 0.0939638537 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
10 Hb_000029_030 0.0946216412 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000025_200 0.0976045362 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
12 Hb_002007_310 0.09869767 - - cyclin family protein [Populus trichocarpa]
13 Hb_007508_070 0.1002851671 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
14 Hb_002014_080 0.1009958012 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
15 Hb_010120_030 0.1031220075 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_011918_080 0.1049329934 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
17 Hb_000049_040 0.1050374377 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
18 Hb_002368_050 0.1061665878 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007919_050 0.1071050955 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
20 Hb_000172_370 0.107479521 - - -

Gene co-expression network

sample Hb_000556_080 Hb_000556_080 Hb_182026_020 Hb_182026_020 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_001439_120 Hb_001439_120 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_010638_020 Hb_010638_020 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_002609_110 Hb_002609_110 Hb_182026_020--Hb_002609_110 Hb_000418_100 Hb_000418_100 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_182026_020--Hb_010638_020 Hb_001855_010 Hb_001855_010 Hb_001135_160--Hb_001855_010 Hb_000172_370 Hb_000172_370 Hb_001135_160--Hb_000172_370 Hb_000365_360 Hb_000365_360 Hb_001135_160--Hb_000365_360 Hb_000017_120 Hb_000017_120 Hb_001135_160--Hb_000017_120 Hb_000012_090 Hb_000012_090 Hb_001135_160--Hb_000012_090 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_001439_120--Hb_010638_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_006693_030 Hb_006693_030 Hb_011224_080--Hb_006693_030 Hb_011224_080--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_011224_080--Hb_002368_050 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_010638_020--Hb_011224_080 Hb_073171_110 Hb_073171_110 Hb_012340_010--Hb_073171_110 Hb_012340_010--Hb_182026_020 Hb_012340_010--Hb_010638_020 Hb_098993_010 Hb_098993_010 Hb_012340_010--Hb_098993_010 Hb_003030_020 Hb_003030_020 Hb_012340_010--Hb_003030_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
176.724 30.8016 23.86 73.8428 280.219 227.234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
210.107 134.809 221.486 67.0364 52.9685

CAGE analysis