Hb_000556_090

Information

Type -
Description -
Location Contig556: 71358-96831
Sequence    

Annotation

kegg
ID rcu:RCOM_1612580
description nucleotide binding protein, putative
nr
ID XP_012083536.1
description PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
swissprot
ID Q54U63
description BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=3 SV=2
trembl
ID B9RDF9
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1612580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48506: 72404-72625 , PASA_asmbl_48507: 72662-72755 , PASA_asmbl_48508: 95526-96862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_090 0.0 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
2 Hb_004108_160 0.0590158205 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
3 Hb_004052_170 0.0685622468 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
4 Hb_003153_010 0.0693205724 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
5 Hb_011228_010 0.0771547026 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001818_100 0.0814570624 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_000340_230 0.0822399274 - - synapse-associated protein, putative [Ricinus communis]
8 Hb_001341_070 0.0828865432 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
9 Hb_029510_050 0.0832146786 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
10 Hb_001629_030 0.0872933695 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
11 Hb_001049_110 0.0873562512 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_005291_050 0.0877603865 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
13 Hb_005686_090 0.0879392612 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
14 Hb_008959_010 0.0885061812 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000184_170 0.0890196279 - - hypothetical protein RCOM_1213430 [Ricinus communis]
16 Hb_001279_030 0.0894275447 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
17 Hb_029879_070 0.0906598873 - - PREDICTED: phospholipase A I [Jatropha curcas]
18 Hb_091296_010 0.0914941913 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_000039_150 0.0920559779 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
20 Hb_001157_240 0.0920828918 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]

Gene co-expression network

sample Hb_000556_090 Hb_000556_090 Hb_004108_160 Hb_004108_160 Hb_000556_090--Hb_004108_160 Hb_004052_170 Hb_004052_170 Hb_000556_090--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_000556_090--Hb_003153_010 Hb_011228_010 Hb_011228_010 Hb_000556_090--Hb_011228_010 Hb_001818_100 Hb_001818_100 Hb_000556_090--Hb_001818_100 Hb_000340_230 Hb_000340_230 Hb_000556_090--Hb_000340_230 Hb_004108_160--Hb_003153_010 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_004052_170--Hb_001818_100 Hb_004052_170--Hb_001629_030 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_004052_170--Hb_000340_230 Hb_029510_050 Hb_029510_050 Hb_004052_170--Hb_029510_050 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_001818_100--Hb_001629_030 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_001163_100 Hb_001163_100 Hb_000340_230--Hb_001163_100 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82311 2.5247 3.67347 5.04959 4.07309 3.57028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41022 3.81762 5.85328 3.462 8.07563

CAGE analysis