Hb_000556_100

Information

Type -
Description -
Location Contig556: 97989-99133
Sequence    

Annotation

kegg
ID rcu:RCOM_1612570
description hypothetical protein
nr
ID XP_010508158.1
description PREDICTED: uncharacterized protein LOC104784782 isoform X2 [Camelina sativa]
swissprot
ID -
description -
trembl
ID A0A067JY00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48509: 97848-99016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_100 0.0 - - PREDICTED: uncharacterized protein LOC104784782 isoform X2 [Camelina sativa]
2 Hb_002045_150 0.0988478418 - - histone acetyltransferase gcn5, putative [Ricinus communis]
3 Hb_000186_260 0.1154682643 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
4 Hb_002918_060 0.1159131468 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
5 Hb_006658_040 0.1168281165 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
6 Hb_011609_050 0.1193873112 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
7 Hb_004976_020 0.1200076917 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
8 Hb_004450_060 0.1223050182 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
9 Hb_000211_110 0.1237422422 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
10 Hb_001357_380 0.1246514993 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_005892_030 0.1247573501 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_000059_140 0.124953327 - - rnase h, putative [Ricinus communis]
13 Hb_003467_010 0.1261770099 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
14 Hb_006452_160 0.1279703276 - - structural constituent of ribosome, putative [Ricinus communis]
15 Hb_002157_260 0.1294433619 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
16 Hb_000487_420 0.1295080032 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
17 Hb_000334_270 0.1300891378 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_002374_280 0.1303480809 - - -
19 Hb_002659_060 0.1309665001 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
20 Hb_140049_030 0.1319098757 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]

Gene co-expression network

sample Hb_000556_100 Hb_000556_100 Hb_002045_150 Hb_002045_150 Hb_000556_100--Hb_002045_150 Hb_000186_260 Hb_000186_260 Hb_000556_100--Hb_000186_260 Hb_002918_060 Hb_002918_060 Hb_000556_100--Hb_002918_060 Hb_006658_040 Hb_006658_040 Hb_000556_100--Hb_006658_040 Hb_011609_050 Hb_011609_050 Hb_000556_100--Hb_011609_050 Hb_004976_020 Hb_004976_020 Hb_000556_100--Hb_004976_020 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_001473_080 Hb_001473_080 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040 Hb_000059_140 Hb_000059_140 Hb_002918_060--Hb_000059_140 Hb_005892_030 Hb_005892_030 Hb_002918_060--Hb_005892_030 Hb_002918_060--Hb_140049_030 Hb_002422_050 Hb_002422_050 Hb_002918_060--Hb_002422_050 Hb_001427_190 Hb_001427_190 Hb_002918_060--Hb_001427_190 Hb_002918_060--Hb_002045_150 Hb_001307_080 Hb_001307_080 Hb_006658_040--Hb_001307_080 Hb_000922_140 Hb_000922_140 Hb_006658_040--Hb_000922_140 Hb_000160_350 Hb_000160_350 Hb_006658_040--Hb_000160_350 Hb_006658_040--Hb_002157_260 Hb_006658_040--Hb_002045_150 Hb_005965_030 Hb_005965_030 Hb_006658_040--Hb_005965_030 Hb_002351_020 Hb_002351_020 Hb_011609_050--Hb_002351_020 Hb_003849_250 Hb_003849_250 Hb_011609_050--Hb_003849_250 Hb_003142_070 Hb_003142_070 Hb_011609_050--Hb_003142_070 Hb_000334_270 Hb_000334_270 Hb_011609_050--Hb_000334_270 Hb_022256_060 Hb_022256_060 Hb_011609_050--Hb_022256_060 Hb_021422_010 Hb_021422_010 Hb_011609_050--Hb_021422_010 Hb_004976_020--Hb_021422_010 Hb_003849_060 Hb_003849_060 Hb_004976_020--Hb_003849_060 Hb_000808_250 Hb_000808_250 Hb_004976_020--Hb_000808_250 Hb_000359_330 Hb_000359_330 Hb_004976_020--Hb_000359_330 Hb_004976_020--Hb_000334_270 Hb_006623_020 Hb_006623_020 Hb_004976_020--Hb_006623_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.15549 5.13782 5.01457 1.42587 8.42061 5.79037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95647 3.3493 0.4849 3.51248 2.41732

CAGE analysis