Hb_000556_110

Information

Type -
Description -
Location Contig556: 98971-120681
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06790g
description POPTRDRAFT_86546; hypothetical protein
nr
ID XP_002320072.1
description hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
swissprot
ID Q50EK3
description Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1
trembl
ID B9IC23
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06790g PE=3 SV=1
Gene Ontology
ID GO:0004197
description cytochrome p450 704c1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48510: 118097-118881 , PASA_asmbl_48511: 118923-119842 , PASA_asmbl_48512: 120466-120599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_110 0.0 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
2 Hb_011618_040 0.1328400121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004195_110 0.1777790967 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
4 Hb_009823_010 0.180238531 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
5 Hb_002311_370 0.1806315073 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
6 Hb_000098_310 0.1871925157 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
7 Hb_000025_020 0.1907648505 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
8 Hb_007416_150 0.1936643155 - - sarcosine oxidase, putative [Ricinus communis]
9 Hb_000976_440 0.1943302418 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000670_110 0.1991656641 - - l-asparaginase, putative [Ricinus communis]
11 Hb_002304_140 0.2041333382 - - ring finger protein, putative [Ricinus communis]
12 Hb_000097_040 0.2046435442 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
13 Hb_000915_070 0.2103456181 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001248_030 0.2183882731 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002110_260 0.2223039947 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000181_160 0.2228835617 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
17 Hb_002325_020 0.2238391259 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001206_090 0.2241751267 - - pyruvate decarboxylase [Hevea brasiliensis]
19 Hb_005539_160 0.2244035257 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_000010_120 0.2246455802 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000556_110 Hb_000556_110 Hb_011618_040 Hb_011618_040 Hb_000556_110--Hb_011618_040 Hb_004195_110 Hb_004195_110 Hb_000556_110--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_000556_110--Hb_009823_010 Hb_002311_370 Hb_002311_370 Hb_000556_110--Hb_002311_370 Hb_000098_310 Hb_000098_310 Hb_000556_110--Hb_000098_310 Hb_000025_020 Hb_000025_020 Hb_000556_110--Hb_000025_020 Hb_000670_110 Hb_000670_110 Hb_011618_040--Hb_000670_110 Hb_000106_070 Hb_000106_070 Hb_011618_040--Hb_000106_070 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_003119_070 Hb_003119_070 Hb_011618_040--Hb_003119_070 Hb_007416_150 Hb_007416_150 Hb_011618_040--Hb_007416_150 Hb_004195_110--Hb_000670_110 Hb_001248_030 Hb_001248_030 Hb_004195_110--Hb_001248_030 Hb_002304_140 Hb_002304_140 Hb_004195_110--Hb_002304_140 Hb_004657_040 Hb_004657_040 Hb_004195_110--Hb_004657_040 Hb_004195_110--Hb_007416_150 Hb_000181_160 Hb_000181_160 Hb_004195_110--Hb_000181_160 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_003576_050 Hb_003576_050 Hb_009823_010--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_009823_010--Hb_001408_050 Hb_009823_010--Hb_000181_160 Hb_000638_090 Hb_000638_090 Hb_009823_010--Hb_000638_090 Hb_009823_010--Hb_000098_310 Hb_002311_370--Hb_000098_310 Hb_002311_370--Hb_000976_440 Hb_002311_370--Hb_009823_010 Hb_002311_370--Hb_000181_160 Hb_000915_070 Hb_000915_070 Hb_002311_370--Hb_000915_070 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_000098_310--Hb_003576_050 Hb_000098_310--Hb_000181_160 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030 Hb_002325_020 Hb_002325_020 Hb_000025_020--Hb_002325_020 Hb_005539_160 Hb_005539_160 Hb_000025_020--Hb_005539_160 Hb_000010_120 Hb_000010_120 Hb_000025_020--Hb_000010_120 Hb_003071_060 Hb_003071_060 Hb_000025_020--Hb_003071_060 Hb_006478_180 Hb_006478_180 Hb_000025_020--Hb_006478_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.506241 4.19716 0.706485 0.928763 0.874609 0.561624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.359663 0.160389 0.488624 11.8696 0.0605702

CAGE analysis