Hb_000556_120

Information

Type -
Description -
Location Contig556: 121053-128382
Sequence    

Annotation

kegg
ID rcu:RCOM_1612530
description Spastin, putative (EC:3.6.4.3)
nr
ID XP_002511743.1
description Spastin, putative [Ricinus communis]
swissprot
ID Q6AZT2
description Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
trembl
ID B9RDF4
description Spastin, putative OS=Ricinus communis GN=RCOM_1612530 PE=3 SV=1
Gene Ontology
ID GO:0005622
description spastin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48513: 121305-128188 , PASA_asmbl_48514: 122248-122649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_120 0.0 - - Spastin, putative [Ricinus communis]
2 Hb_005634_010 0.053938797 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000329_060 0.055497309 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
4 Hb_000140_290 0.057091858 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
5 Hb_001876_050 0.0608434724 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
6 Hb_004324_130 0.0617510621 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_001252_120 0.0641407468 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
8 Hb_006831_140 0.0646029603 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_000028_180 0.0654938244 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
10 Hb_073973_100 0.0662438244 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
11 Hb_008725_230 0.0668114517 - - PREDICTED: CTP synthase [Jatropha curcas]
12 Hb_001500_140 0.0673331272 - - pelota, putative [Ricinus communis]
13 Hb_093458_040 0.0683958423 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_001301_150 0.0695441374 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
15 Hb_000138_100 0.0709511683 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
16 Hb_002456_010 0.0710484672 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
17 Hb_000181_400 0.0711666988 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
18 Hb_002110_190 0.0721135448 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
19 Hb_023732_030 0.0722961706 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
20 Hb_000381_120 0.0727081291 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_120 Hb_000556_120 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_005634_010--Hb_000140_290 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000329_060--Hb_000140_290 Hb_005357_160 Hb_005357_160 Hb_000329_060--Hb_005357_160 Hb_000329_060--Hb_000836_460 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_001876_050--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_004324_130--Hb_006831_140 Hb_000028_180 Hb_000028_180 Hb_001252_120--Hb_000028_180 Hb_001252_120--Hb_008725_230 Hb_001252_120--Hb_004324_130 Hb_001584_120 Hb_001584_120 Hb_001252_120--Hb_001584_120 Hb_022115_020 Hb_022115_020 Hb_001252_120--Hb_022115_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3449 10.2247 10.4132 14.5007 10.1582 9.77886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9656 11.4058 12.0001 18.3128 10.3289

CAGE analysis