Hb_000556_160

Information

Type -
Description -
Location Contig556: 157645-162050
Sequence    

Annotation

kegg
ID rcu:RCOM_1612490
description hypothetical protein
nr
ID XP_012083548.1
description PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9H8Y5
description Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1
trembl
ID A0A067K907
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14506 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ankyrin repeat and zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48520: 157854-158424 , PASA_asmbl_48521: 157965-158728 , PASA_asmbl_48522: 158761-158855 , PASA_asmbl_48523: 158929-159448 , PASA_asmbl_48524: 159932-161793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_160 0.0 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
2 Hb_002686_030 0.0563969149 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
3 Hb_001341_170 0.0612695721 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_004724_150 0.0647358859 - - expressed protein, putative [Ricinus communis]
5 Hb_002499_040 0.0667789292 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
6 Hb_003294_070 0.0700054145 - - hypothetical protein RCOM_1714550 [Ricinus communis]
7 Hb_000185_030 0.0703180603 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
8 Hb_000225_040 0.0708349884 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
9 Hb_000041_110 0.0717911761 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
10 Hb_001226_040 0.071810672 - - protein with unknown function [Ricinus communis]
11 Hb_000329_470 0.0719453758 - - ccr4-not transcription complex, putative [Ricinus communis]
12 Hb_002391_310 0.0723280386 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
13 Hb_004994_220 0.0725133943 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_167498_010 0.0728345521 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
15 Hb_000003_320 0.0734481189 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
16 Hb_000002_010 0.073997044 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
17 Hb_000260_270 0.0753638749 - - zinc finger protein, putative [Ricinus communis]
18 Hb_011485_070 0.0755290948 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
19 Hb_017862_020 0.0762639727 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
20 Hb_120327_010 0.0763075499 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_160 Hb_000556_160 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_000538_270 Hb_000538_270 Hb_002686_030--Hb_000538_270 Hb_000289_060 Hb_000289_060 Hb_002686_030--Hb_000289_060 Hb_017862_020 Hb_017862_020 Hb_002686_030--Hb_017862_020 Hb_007163_120 Hb_007163_120 Hb_002686_030--Hb_007163_120 Hb_002686_030--Hb_002499_040 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_004724_150--Hb_000297_010 Hb_000245_040 Hb_000245_040 Hb_004724_150--Hb_000245_040 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_000757_060 Hb_000757_060 Hb_002499_040--Hb_000757_060 Hb_002499_040--Hb_000538_270 Hb_000504_140 Hb_000504_140 Hb_002499_040--Hb_000504_140 Hb_001226_040 Hb_001226_040 Hb_002499_040--Hb_001226_040 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_000185_030--Hb_000297_010 Hb_000710_060 Hb_000710_060 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55286 8.67329 4.72531 5.11839 7.41613 9.09224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64597 9.77527 10.8526 11.8242 6.22316

CAGE analysis