Hb_000556_180

Information

Type -
Description -
Location Contig556: 183396-183914
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06690g
description POPTRDRAFT_823907; hypothetical protein
nr
ID XP_002320732.1
description hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IC13
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48532: 183479-183888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_180 0.0 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
2 Hb_000057_180 0.1006631474 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
3 Hb_005730_070 0.1324302309 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
4 Hb_011861_020 0.1328237321 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_150730_010 0.1350206952 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_000834_210 0.1428367782 - - unnamed protein product [Vitis vinifera]
7 Hb_116469_010 0.1448577034 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
8 Hb_000471_010 0.1476012 - - ATP binding protein, putative [Ricinus communis]
9 Hb_028927_010 0.149328147 - - leucine-rich repeat protein, putative [Ricinus communis]
10 Hb_000684_490 0.152089215 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
11 Hb_002003_030 0.1542684082 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
12 Hb_000085_290 0.1553344037 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
13 Hb_000005_350 0.1629932864 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
14 Hb_004586_110 0.1642004107 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_006788_010 0.1657695593 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
16 Hb_000723_240 0.1666187807 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
17 Hb_000589_100 0.1685236478 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_009778_050 0.1694177424 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
19 Hb_007313_010 0.1697198067 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
20 Hb_001024_030 0.1718523398 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_180 Hb_000556_180 Hb_000057_180 Hb_000057_180 Hb_000556_180--Hb_000057_180 Hb_005730_070 Hb_005730_070 Hb_000556_180--Hb_005730_070 Hb_011861_020 Hb_011861_020 Hb_000556_180--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000556_180--Hb_150730_010 Hb_000834_210 Hb_000834_210 Hb_000556_180--Hb_000834_210 Hb_116469_010 Hb_116469_010 Hb_000556_180--Hb_116469_010 Hb_000057_180--Hb_011861_020 Hb_000057_180--Hb_150730_010 Hb_000057_180--Hb_116469_010 Hb_028927_010 Hb_028927_010 Hb_000057_180--Hb_028927_010 Hb_000471_010 Hb_000471_010 Hb_000057_180--Hb_000471_010 Hb_002003_030 Hb_002003_030 Hb_000057_180--Hb_002003_030 Hb_001349_020 Hb_001349_020 Hb_005730_070--Hb_001349_020 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_005730_070--Hb_000057_180 Hb_000017_320 Hb_000017_320 Hb_005730_070--Hb_000017_320 Hb_002304_190 Hb_002304_190 Hb_005730_070--Hb_002304_190 Hb_002003_010 Hb_002003_010 Hb_005730_070--Hb_002003_010 Hb_011861_020--Hb_000471_010 Hb_011861_020--Hb_150730_010 Hb_000005_350 Hb_000005_350 Hb_011861_020--Hb_000005_350 Hb_011861_020--Hb_116469_010 Hb_000684_490 Hb_000684_490 Hb_011861_020--Hb_000684_490 Hb_150730_010--Hb_002003_030 Hb_009778_050 Hb_009778_050 Hb_150730_010--Hb_009778_050 Hb_150730_010--Hb_116469_010 Hb_150730_010--Hb_000471_010 Hb_003160_050 Hb_003160_050 Hb_000834_210--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_000834_210--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_000834_210--Hb_000723_240 Hb_000834_210--Hb_002003_010 Hb_000834_210--Hb_011861_020 Hb_000834_210--Hb_000057_180 Hb_116469_010--Hb_002003_030 Hb_116469_010--Hb_028927_010 Hb_116469_010--Hb_000005_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.390329 0.958873 0.626393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.147312 0 2.3218 0.26165

CAGE analysis