Hb_000556_200

Information

Type -
Description -
Location Contig556: 198612-199538
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06650g
description POPTRDRAFT_663826; DNA-binding family protein
nr
ID XP_012083556.1
description PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
swissprot
ID O22130
description AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1
trembl
ID A0A067K910
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14511 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_200 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
2 Hb_008503_020 0.1094370399 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_000043_080 0.1094731476 - - lipid binding protein, putative [Ricinus communis]
4 Hb_002007_230 0.1123913641 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
5 Hb_003086_200 0.1148350993 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_001596_040 0.1188041161 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
7 Hb_001489_030 0.1207625351 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
8 Hb_000300_570 0.1235378793 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
9 Hb_012395_070 0.1259059771 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_029508_030 0.1288889782 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
11 Hb_001864_010 0.1303850578 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012019_020 0.1327747544 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
13 Hb_002171_070 0.1333345699 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
14 Hb_001709_070 0.1359003336 - - carbohydrate binding protein, putative [Ricinus communis]
15 Hb_012053_030 0.1381882983 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
16 Hb_004574_010 0.13929925 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
17 Hb_005797_030 0.1412669484 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
18 Hb_003677_010 0.1416511917 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
19 Hb_000265_010 0.1450861829 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000101_050 0.1461299031 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000556_200 Hb_000556_200 Hb_008503_020 Hb_008503_020 Hb_000556_200--Hb_008503_020 Hb_000043_080 Hb_000043_080 Hb_000556_200--Hb_000043_080 Hb_002007_230 Hb_002007_230 Hb_000556_200--Hb_002007_230 Hb_003086_200 Hb_003086_200 Hb_000556_200--Hb_003086_200 Hb_001596_040 Hb_001596_040 Hb_000556_200--Hb_001596_040 Hb_001489_030 Hb_001489_030 Hb_000556_200--Hb_001489_030 Hb_008503_020--Hb_001489_030 Hb_001709_070 Hb_001709_070 Hb_008503_020--Hb_001709_070 Hb_008503_020--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070 Hb_000043_080--Hb_001489_030 Hb_000043_080--Hb_003086_200 Hb_012395_070 Hb_012395_070 Hb_000043_080--Hb_012395_070 Hb_000043_080--Hb_002007_230 Hb_000265_010 Hb_000265_010 Hb_000043_080--Hb_000265_010 Hb_002007_230--Hb_003086_200 Hb_005797_030 Hb_005797_030 Hb_002007_230--Hb_005797_030 Hb_000300_570 Hb_000300_570 Hb_002007_230--Hb_000300_570 Hb_002007_230--Hb_001864_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_003086_200--Hb_000265_010 Hb_003086_200--Hb_005797_030 Hb_003086_200--Hb_000300_570 Hb_003086_200--Hb_012053_030 Hb_002171_070 Hb_002171_070 Hb_001596_040--Hb_002171_070 Hb_012019_020 Hb_012019_020 Hb_001596_040--Hb_012019_020 Hb_002917_030 Hb_002917_030 Hb_001596_040--Hb_002917_030 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_001489_030--Hb_000300_570 Hb_001489_030--Hb_002917_030 Hb_001489_030--Hb_000265_010 Hb_001489_030--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030436 1.15492 0.0953989 0.0642163 0 0.027586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.83708 0.0891705

CAGE analysis