Hb_000556_210

Information

Type -
Description -
Location Contig556: 236383-236987
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06640g
description POPTRDRAFT_899970; hypothetical protein
nr
ID XP_002320065.2
description hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
swissprot
ID Q8RZB5
description Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1
trembl
ID B9IC08
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06640g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48534: 237612-250799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_210 0.0 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
2 Hb_002106_020 0.0025862646 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
3 Hb_002284_140 0.0050989217 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
4 Hb_004092_020 0.005496022 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
5 Hb_183658_010 0.0055405824 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_151697_010 0.0066449714 - - clathrin assembly protein, putative [Ricinus communis]
7 Hb_009711_060 0.0069064863 - - -
8 Hb_001104_030 0.01385012 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
9 Hb_000053_140 0.0150720016 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004375_090 0.0171129774 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
11 Hb_005663_020 0.0191479873 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
12 Hb_001645_080 0.0196764428 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
13 Hb_141016_010 0.0205372654 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
14 Hb_001488_170 0.021674416 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
15 Hb_000760_090 0.025126386 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
16 Hb_005065_090 0.0253676149 - - zinc/iron transporter, putative [Ricinus communis]
17 Hb_006469_100 0.0290214078 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
18 Hb_001946_090 0.0304318848 - - -
19 Hb_000574_060 0.0305661766 - - hypothetical protein F775_19731 [Aegilops tauschii]
20 Hb_010543_010 0.0314744957 - - Phospholipid-transporting ATPase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000556_210 Hb_000556_210 Hb_002106_020 Hb_002106_020 Hb_000556_210--Hb_002106_020 Hb_002284_140 Hb_002284_140 Hb_000556_210--Hb_002284_140 Hb_004092_020 Hb_004092_020 Hb_000556_210--Hb_004092_020 Hb_183658_010 Hb_183658_010 Hb_000556_210--Hb_183658_010 Hb_151697_010 Hb_151697_010 Hb_000556_210--Hb_151697_010 Hb_009711_060 Hb_009711_060 Hb_000556_210--Hb_009711_060 Hb_002106_020--Hb_183658_010 Hb_002106_020--Hb_151697_010 Hb_002106_020--Hb_009711_060 Hb_002106_020--Hb_002284_140 Hb_002106_020--Hb_004092_020 Hb_002284_140--Hb_004092_020 Hb_000053_140 Hb_000053_140 Hb_002284_140--Hb_000053_140 Hb_002284_140--Hb_183658_010 Hb_002284_140--Hb_151697_010 Hb_004092_020--Hb_000053_140 Hb_004092_020--Hb_183658_010 Hb_004092_020--Hb_151697_010 Hb_183658_010--Hb_151697_010 Hb_183658_010--Hb_009711_060 Hb_001104_030 Hb_001104_030 Hb_183658_010--Hb_001104_030 Hb_151697_010--Hb_009711_060 Hb_151697_010--Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_151697_010--Hb_004375_090 Hb_009711_060--Hb_001104_030 Hb_009711_060--Hb_004375_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0885493 0.0673823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis