Hb_000556_220

Information

Type -
Description -
Location Contig556: 237501-250857
Sequence    

Annotation

kegg
ID rcu:RCOM_1612320
description cytohesin 1, 2, 3, putative
nr
ID XP_012083558.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
swissprot
ID Q9LZX8
description Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1
trembl
ID A0A067JY10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14513 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48534: 237612-250799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_220 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
2 Hb_000037_220 0.0567257244 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
3 Hb_085781_020 0.0681627787 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
4 Hb_002311_100 0.0717289491 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
5 Hb_004019_120 0.0720563337 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
6 Hb_140627_020 0.0724169791 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
7 Hb_003060_060 0.0744879808 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_041327_010 0.0763191435 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
9 Hb_005656_040 0.0769540153 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_000723_220 0.0770294199 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
11 Hb_000537_050 0.0781126556 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
12 Hb_000230_260 0.0781941855 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
13 Hb_001188_020 0.0783907526 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
14 Hb_005563_060 0.0790534872 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
15 Hb_011202_020 0.0792549443 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
16 Hb_004410_120 0.0806800161 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
17 Hb_000395_070 0.0807785335 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
18 Hb_000094_310 0.0812748249 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
19 Hb_001377_350 0.0828219559 - - PREDICTED: exportin-2 [Jatropha curcas]
20 Hb_000003_100 0.0834610717 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_220 Hb_000556_220 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_085781_020--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_085781_020--Hb_000230_260 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_085781_020--Hb_003060_060 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_005656_040 Hb_005656_040 Hb_002311_100--Hb_005656_040 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_004019_120--Hb_000230_260 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_004019_120--Hb_000140_210 Hb_002235_200 Hb_002235_200 Hb_140627_020--Hb_002235_200 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_140627_020--Hb_005656_040 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_003060_060--Hb_041327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7947 18.4589 8.55857 16.5891 13.8522 18.5765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.61213 4.75685 16.3688 18.8745 16.7149

CAGE analysis