Hb_000557_070

Information

Type -
Description -
Location Contig557: 41347-45749
Sequence    

Annotation

kegg
ID rcu:RCOM_1255980
description S-locus-specific glycoprotein S13 precursor, putative
nr
ID XP_002525781.1
description S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID B9SIG2
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1255980 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48599: 41326-45751 , PASA_asmbl_48600: 43492-44796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000557_070 0.0 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
2 Hb_004724_090 0.0297842852 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
3 Hb_006117_030 0.0411581367 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004993_020 0.0449734505 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
5 Hb_068580_010 0.045501839 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
6 Hb_000731_150 0.0457909616 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
7 Hb_002743_010 0.0467941347 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004735_030 0.0478643878 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
9 Hb_001571_100 0.0484536424 - - chlorophyll A-B binding family protein [Populus trichocarpa]
10 Hb_014056_020 0.0487440843 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001519_140 0.0510726761 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
12 Hb_000333_010 0.0511737186 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
13 Hb_002043_020 0.052894129 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
14 Hb_000915_210 0.0560784752 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002965_170 0.057920611 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
16 Hb_041433_010 0.0604364192 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_001141_180 0.0607970567 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
18 Hb_001206_110 0.060881976 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
19 Hb_000512_120 0.061677625 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_001205_220 0.0617036323 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000557_070 Hb_000557_070 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_006117_030 Hb_006117_030 Hb_000557_070--Hb_006117_030 Hb_004993_020 Hb_004993_020 Hb_000557_070--Hb_004993_020 Hb_068580_010 Hb_068580_010 Hb_000557_070--Hb_068580_010 Hb_000731_150 Hb_000731_150 Hb_000557_070--Hb_000731_150 Hb_002743_010 Hb_002743_010 Hb_000557_070--Hb_002743_010 Hb_004735_030 Hb_004735_030 Hb_004724_090--Hb_004735_030 Hb_004724_090--Hb_006117_030 Hb_004724_090--Hb_004993_020 Hb_004724_090--Hb_000731_150 Hb_001206_110 Hb_001206_110 Hb_004724_090--Hb_001206_110 Hb_014056_020 Hb_014056_020 Hb_006117_030--Hb_014056_020 Hb_002965_170 Hb_002965_170 Hb_006117_030--Hb_002965_170 Hb_001205_140 Hb_001205_140 Hb_006117_030--Hb_001205_140 Hb_000915_210 Hb_000915_210 Hb_006117_030--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_004993_020--Hb_001519_140 Hb_003086_140 Hb_003086_140 Hb_004993_020--Hb_003086_140 Hb_004993_020--Hb_068580_010 Hb_004993_020--Hb_000731_150 Hb_000010_160 Hb_000010_160 Hb_004993_020--Hb_000010_160 Hb_003734_070 Hb_003734_070 Hb_068580_010--Hb_003734_070 Hb_068580_010--Hb_000731_150 Hb_000077_020 Hb_000077_020 Hb_068580_010--Hb_000077_020 Hb_004880_020 Hb_004880_020 Hb_068580_010--Hb_004880_020 Hb_001205_220 Hb_001205_220 Hb_000731_150--Hb_001205_220 Hb_000731_150--Hb_002743_010 Hb_000731_150--Hb_001519_140 Hb_002743_010--Hb_014056_020 Hb_002743_010--Hb_000915_210 Hb_001571_100 Hb_001571_100 Hb_002743_010--Hb_001571_100 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0367817 5.14182 2.70958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00564933 5.34902

CAGE analysis