Hb_000559_050

Information

Type -
Description -
Location Contig559: 75163-78001
Sequence    

Annotation

kegg
ID rcu:RCOM_1692370
description hypothetical protein
nr
ID KDP25273.1
description hypothetical protein JCGZ_20429 [Jatropha curcas]
swissprot
ID Q8L7I1
description Uncharacterized protein At4g10930 OS=Arabidopsis thaliana GN=At4g10930 PE=2 SV=1
trembl
ID A0A067JR50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20429 PE=4 SV=1
Gene Ontology
ID GO:0046872
description hypothetical protein JCGZ_20429

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000559_050 0.0 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
2 Hb_027998_030 0.1822621497 - - laccase, putative [Ricinus communis]
3 Hb_002026_230 0.2136760785 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_000605_010 0.2175880418 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_004007_150 0.2215532822 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
6 Hb_002234_220 0.2226310062 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
7 Hb_003534_040 0.2226448723 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
8 Hb_000153_020 0.2242245278 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001276_010 0.2262645168 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
10 Hb_000879_050 0.231057032 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
11 Hb_005568_070 0.2333447544 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
12 Hb_001892_160 0.235249563 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
13 Hb_073212_010 0.2362192266 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
14 Hb_000200_060 0.2386737662 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
15 Hb_007634_020 0.2419106295 - - -
16 Hb_001741_100 0.2432107858 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
17 Hb_007382_040 0.2439676706 - - uncharacterized LOC105644857 [Jatropha curcas]
18 Hb_002609_100 0.2451932141 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
19 Hb_003772_080 0.2452325965 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_000176_060 0.246444658 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000559_050 Hb_000559_050 Hb_027998_030 Hb_027998_030 Hb_000559_050--Hb_027998_030 Hb_002026_230 Hb_002026_230 Hb_000559_050--Hb_002026_230 Hb_000605_010 Hb_000605_010 Hb_000559_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000559_050--Hb_004007_150 Hb_002234_220 Hb_002234_220 Hb_000559_050--Hb_002234_220 Hb_003534_040 Hb_003534_040 Hb_000559_050--Hb_003534_040 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_000836_050 Hb_000836_050 Hb_002026_230--Hb_000836_050 Hb_012150_070 Hb_012150_070 Hb_002026_230--Hb_012150_070 Hb_002609_100 Hb_002609_100 Hb_002026_230--Hb_002609_100 Hb_002026_230--Hb_007634_020 Hb_005568_070 Hb_005568_070 Hb_002026_230--Hb_005568_070 Hb_000018_160 Hb_000018_160 Hb_002026_230--Hb_000018_160 Hb_001138_010 Hb_001138_010 Hb_000605_010--Hb_001138_010 Hb_073212_010 Hb_073212_010 Hb_000605_010--Hb_073212_010 Hb_000605_010--Hb_002234_220 Hb_001677_050 Hb_001677_050 Hb_000605_010--Hb_001677_050 Hb_000879_050 Hb_000879_050 Hb_000605_010--Hb_000879_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010 Hb_004007_150--Hb_003534_040 Hb_004007_150--Hb_073212_010 Hb_000101_210 Hb_000101_210 Hb_004007_150--Hb_000101_210 Hb_004007_150--Hb_001677_050 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_004007_150--Hb_088542_010 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_001741_100 Hb_001741_100 Hb_002234_220--Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_002234_220--Hb_002217_130 Hb_000200_060 Hb_000200_060 Hb_002234_220--Hb_000200_060 Hb_002234_220--Hb_073212_010 Hb_003534_040--Hb_073212_010 Hb_018344_010 Hb_018344_010 Hb_003534_040--Hb_018344_010 Hb_003534_040--Hb_027998_030 Hb_001691_050 Hb_001691_050 Hb_003534_040--Hb_001691_050 Hb_003534_040--Hb_000101_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25436 0.0316073 0 0.015814 0.153226 0.121798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0189893 0 0.0075593 0

CAGE analysis