Hb_000560_050

Information

Type -
Description -
Location Contig560: 81164-81388
Sequence    

Annotation

kegg
ID rcu:RCOM_2133810
description hypothetical protein
nr
ID KDP44271.1
description hypothetical protein JCGZ_05738 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L755
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000560_050 0.0 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
2 Hb_038135_010 0.0125631346 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
3 Hb_019708_010 0.0166125362 - - -
4 Hb_119748_010 0.0347729256 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_014749_010 0.0399472858 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
6 Hb_007320_050 0.0475222162 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
7 Hb_006533_010 0.0535579432 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_004162_310 0.053858367 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_005066_060 0.0716591823 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
10 Hb_012136_010 0.0721765648 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_002659_020 0.0788643332 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
12 Hb_009659_060 0.0808895624 - - cell wall invertase [Manihot esculenta]
13 Hb_008775_050 0.0984377071 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
14 Hb_005563_020 0.1045242019 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
15 Hb_005389_180 0.108553657 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
16 Hb_000383_030 0.1104835636 - - -
17 Hb_000500_160 0.1176602878 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
18 Hb_000905_020 0.1199793361 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
19 Hb_004324_140 0.123125758 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
20 Hb_184964_010 0.1238431526 - - -

Gene co-expression network

sample Hb_000560_050 Hb_000560_050 Hb_038135_010 Hb_038135_010 Hb_000560_050--Hb_038135_010 Hb_019708_010 Hb_019708_010 Hb_000560_050--Hb_019708_010 Hb_119748_010 Hb_119748_010 Hb_000560_050--Hb_119748_010 Hb_014749_010 Hb_014749_010 Hb_000560_050--Hb_014749_010 Hb_007320_050 Hb_007320_050 Hb_000560_050--Hb_007320_050 Hb_006533_010 Hb_006533_010 Hb_000560_050--Hb_006533_010 Hb_038135_010--Hb_019708_010 Hb_038135_010--Hb_119748_010 Hb_038135_010--Hb_006533_010 Hb_038135_010--Hb_014749_010 Hb_005066_060 Hb_005066_060 Hb_038135_010--Hb_005066_060 Hb_019708_010--Hb_119748_010 Hb_019708_010--Hb_006533_010 Hb_019708_010--Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_019708_010--Hb_012136_010 Hb_119748_010--Hb_006533_010 Hb_119748_010--Hb_005066_060 Hb_119748_010--Hb_012136_010 Hb_014749_010--Hb_007320_050 Hb_004162_310 Hb_004162_310 Hb_014749_010--Hb_004162_310 Hb_002659_020 Hb_002659_020 Hb_014749_010--Hb_002659_020 Hb_009659_060 Hb_009659_060 Hb_014749_010--Hb_009659_060 Hb_007320_050--Hb_004162_310 Hb_007320_050--Hb_002659_020 Hb_007320_050--Hb_009659_060 Hb_007320_050--Hb_038135_010 Hb_006533_010--Hb_005066_060 Hb_006533_010--Hb_012136_010 Hb_005563_020 Hb_005563_020 Hb_006533_010--Hb_005563_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.88974 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.2642 0

CAGE analysis