Hb_000562_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig562: 37117-38943
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382142.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_010 0.0 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_158296_010 0.1444784225 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_001208_020 0.1713634201 - - -
4 Hb_007416_080 0.1731325812 - - -
5 Hb_001248_180 0.1930839723 - - -
6 Hb_133648_010 0.2026117464 - - -
7 Hb_000164_130 0.2044527858 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_081228_010 0.2053649975 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
9 Hb_001006_130 0.2205743637 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
10 Hb_048183_010 0.2298143616 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_001428_010 0.2307053148 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
12 Hb_097783_010 0.2312923251 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_178711_010 0.2391792245 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
14 Hb_008066_020 0.2392096645 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000628_060 0.2406252597 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
16 Hb_000577_070 0.2413738254 - - -
17 Hb_009411_030 0.2432875539 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
18 Hb_003925_130 0.2439337512 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_010638_030 0.2448168501 - - oleosin1 [Plukenetia volubilis]
20 Hb_003641_010 0.245693892 - - Pectinesterase-3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000562_010 Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_000562_010--Hb_158296_010 Hb_001208_020 Hb_001208_020 Hb_000562_010--Hb_001208_020 Hb_007416_080 Hb_007416_080 Hb_000562_010--Hb_007416_080 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_133648_010 Hb_133648_010 Hb_000562_010--Hb_133648_010 Hb_000164_130 Hb_000164_130 Hb_000562_010--Hb_000164_130 Hb_158296_010--Hb_133648_010 Hb_158296_010--Hb_007416_080 Hb_158296_010--Hb_001208_020 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_053073_010 Hb_053073_010 Hb_001208_020--Hb_053073_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090 Hb_048183_010 Hb_048183_010 Hb_007416_080--Hb_048183_010 Hb_007416_080--Hb_133648_010 Hb_007416_080--Hb_000164_130 Hb_007416_080--Hb_001208_020 Hb_081228_010 Hb_081228_010 Hb_001248_180--Hb_081228_010 Hb_009411_030 Hb_009411_030 Hb_001248_180--Hb_009411_030 Hb_000628_060 Hb_000628_060 Hb_001248_180--Hb_000628_060 Hb_008066_020 Hb_008066_020 Hb_001248_180--Hb_008066_020 Hb_004474_020 Hb_004474_020 Hb_001248_180--Hb_004474_020 Hb_010926_020 Hb_010926_020 Hb_001248_180--Hb_010926_020 Hb_133648_010--Hb_048183_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_072290_010 Hb_072290_010 Hb_133648_010--Hb_072290_010 Hb_000164_130--Hb_048183_010 Hb_000164_130--Hb_133648_010 Hb_000164_130--Hb_001208_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0310991 0.0361568 0.234884 0 0.0433367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis