Hb_000562_030

Information

Type -
Description -
Location Contig562: 51803-54550
Sequence    

Annotation

kegg
ID rcu:RCOM_1597240
description hypothetical protein
nr
ID XP_002510510.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55FA4
description Probable DNA-directed RNA polymerase I subunit RPA43 OS=Dictyostelium discoideum GN=rpa43 PE=2 SV=1
trembl
ID B9R867
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1597240 PE=4 SV=1
Gene Ontology
ID GO:0003899
description probable dna-directed rna polymerase i subunit rpa43 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48862: 51856-54517 , PASA_asmbl_48863: 51856-54517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005773_060 0.0716195494 - - defender against cell death, putative [Ricinus communis]
3 Hb_002811_260 0.0859524674 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
4 Hb_000160_060 0.0961562177 - - unknown [Populus trichocarpa]
5 Hb_000359_150 0.0980898934 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
6 Hb_003544_020 0.0988545061 - - PREDICTED: elongin-A [Jatropha curcas]
7 Hb_000690_190 0.1012453197 - - 40S ribosomal protein S7, putative [Ricinus communis]
8 Hb_001016_150 0.1021925398 - - Rop1 [Hevea brasiliensis]
9 Hb_002601_110 0.1023550085 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
10 Hb_002192_010 0.1038035211 - - -
11 Hb_124953_020 0.1050324822 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
12 Hb_000261_160 0.1086646286 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
13 Hb_001454_400 0.110351837 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
14 Hb_001195_480 0.1110242402 - - cop9 complex subunit, putative [Ricinus communis]
15 Hb_000186_190 0.1120611962 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
16 Hb_021419_020 0.1125385287 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_001221_320 0.1128001735 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
18 Hb_055062_020 0.1136456141 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
19 Hb_001728_030 0.113961656 - - 60S ribosomal protein L15 [Populus trichocarpa]
20 Hb_001902_130 0.1141067041 - - 60S ribosomal protein L36-2 [Morus notabilis]

Gene co-expression network

sample Hb_000562_030 Hb_000562_030 Hb_005773_060 Hb_005773_060 Hb_000562_030--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000562_030--Hb_002811_260 Hb_000160_060 Hb_000160_060 Hb_000562_030--Hb_000160_060 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_003544_020 Hb_003544_020 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_005773_060--Hb_002811_260 Hb_005773_060--Hb_003544_020 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_005054_060 Hb_005054_060 Hb_000160_060--Hb_005054_060 Hb_009694_010 Hb_009694_010 Hb_000160_060--Hb_009694_010 Hb_005731_050 Hb_005731_050 Hb_000160_060--Hb_005731_050 Hb_000111_380 Hb_000111_380 Hb_000160_060--Hb_000111_380 Hb_000329_200 Hb_000329_200 Hb_000160_060--Hb_000329_200 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000359_150--Hb_000690_190 Hb_004041_020 Hb_004041_020 Hb_000359_150--Hb_004041_020 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_003544_020--Hb_000186_190 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_002307_180 Hb_002307_180 Hb_000690_190--Hb_002307_180 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_000690_190--Hb_002171_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8973 5.54197 22.4042 21.8919 15.9937 17.5159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7254 32.812 8.5078 11.9788 5.02997

CAGE analysis