Hb_000562_070

Information

Type -
Description -
Location Contig562: 85231-89182
Sequence    

Annotation

kegg
ID rcu:RCOM_1596990
description hypothetical protein
nr
ID XP_012073837.1
description PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08241 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tld-domain containing nucleolar protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48867: 85309-89061
cDNA
(Sanger)
(ID:Location)		 046_C05r.ab1: 83276-85099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_070 0.0 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
2 Hb_000529_130 0.0618496674 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
3 Hb_001277_340 0.069818908 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_001279_020 0.0712797211 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
5 Hb_029552_020 0.0760845211 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005305_130 0.0797755487 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
7 Hb_000771_170 0.0818143841 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002600_070 0.0821820165 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
9 Hb_001396_020 0.0846467647 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_001140_180 0.0855179248 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
11 Hb_006846_170 0.0888671637 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
12 Hb_003470_070 0.0923777104 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
13 Hb_010620_050 0.093315604 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
14 Hb_009158_060 0.0953456909 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
15 Hb_000482_050 0.0956043316 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
16 Hb_004994_350 0.096493342 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
17 Hb_007594_080 0.0966098593 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
18 Hb_000862_100 0.0966636368 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
19 Hb_001427_210 0.0978465868 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
20 Hb_003071_030 0.1017640339 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000562_070 Hb_000562_070 Hb_000529_130 Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_001277_340 Hb_001277_340 Hb_000562_070--Hb_001277_340 Hb_001279_020 Hb_001279_020 Hb_000562_070--Hb_001279_020 Hb_029552_020 Hb_029552_020 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_029552_020 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_002600_070 Hb_002600_070 Hb_001277_340--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_001277_340--Hb_009158_060 Hb_001277_340--Hb_005305_130 Hb_000155_170 Hb_000155_170 Hb_001277_340--Hb_000155_170 Hb_003925_060 Hb_003925_060 Hb_001277_340--Hb_003925_060 Hb_001279_020--Hb_001396_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_029552_020--Hb_005305_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_005305_130--Hb_009158_060 Hb_003661_010 Hb_003661_010 Hb_005305_130--Hb_003661_010 Hb_160608_010 Hb_160608_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.87733 14.701 23.6055 15.9113 11.3684 7.88168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91788 3.25031 5.12219 7.8482 23.6169

CAGE analysis