Hb_000562_090

Information

Type transcription factor
Description TF Family: C3H
Location Contig562: 92915-98435
Sequence    

Annotation

kegg
ID rcu:RCOM_1596980
description nucleic acid binding protein, putative
nr
ID XP_012073844.1
description PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q56XU4
description Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1
trembl
ID A0A067KLD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08243 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48868: 92840-98297
cDNA
(Sanger)
(ID:Location)		 013_D13.ab1: 97948-98222 , 013_P13.ab1: 94342-98297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_090 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
2 Hb_002671_140 0.0557947733 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_003609_030 0.0622077518 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_008643_210 0.0738854804 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
5 Hb_013399_100 0.0745311807 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003464_050 0.0745912926 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
7 Hb_000915_020 0.0759621609 - - unnamed protein product [Vitis vinifera]
8 Hb_002045_240 0.0771492853 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
9 Hb_000479_220 0.0780414609 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
10 Hb_005993_050 0.0783254624 - - Protein AFR, putative [Ricinus communis]
11 Hb_000060_090 0.0803877742 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
12 Hb_001409_020 0.0809469384 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
13 Hb_005532_050 0.080968188 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_033720_010 0.081252634 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
15 Hb_005779_080 0.0815362242 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
16 Hb_000000_270 0.0823611415 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
17 Hb_000030_190 0.0829857111 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
18 Hb_005489_080 0.0836734505 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001252_010 0.0839146786 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
20 Hb_000336_250 0.0839579084 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000562_090 Hb_000562_090 Hb_002671_140 Hb_002671_140 Hb_000562_090--Hb_002671_140 Hb_003609_030 Hb_003609_030 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_002671_140--Hb_003609_030 Hb_000442_150 Hb_000442_150 Hb_002671_140--Hb_000442_150 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_008246_040 Hb_008246_040 Hb_002671_140--Hb_008246_040 Hb_057878_010 Hb_057878_010 Hb_002671_140--Hb_057878_010 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_016172_020 Hb_016172_020 Hb_008643_210--Hb_016172_020 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380 Hb_000915_020--Hb_008246_040 Hb_000915_020--Hb_001409_020 Hb_014497_050 Hb_014497_050 Hb_000915_020--Hb_014497_050 Hb_011671_430 Hb_011671_430 Hb_000915_020--Hb_011671_430 Hb_000308_030 Hb_000308_030 Hb_000915_020--Hb_000308_030 Hb_000915_020--Hb_005993_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.208 23.1189 12.7598 14.8822 18.2304 27.234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8897 14.6358 16.652 8.73645 11.6083

CAGE analysis