Hb_000562_100

Information

Type -
Description -
Location Contig562: 114927-121187
Sequence    

Annotation

kegg
ID rcu:RCOM_1596950
description hypothetical protein
nr
ID XP_012073845.1
description PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
swissprot
ID Q9FXI5
description Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
trembl
ID A0A067KPK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08244 PE=4 SV=1
Gene Ontology
ID GO:0005515
description calmodulin-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48869: 114948-121374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_100 0.0 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
2 Hb_012353_040 0.0788629838 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_000997_070 0.086368624 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
4 Hb_003849_120 0.1035137824 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
5 Hb_000012_400 0.1054260033 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
6 Hb_004052_180 0.1085099216 - - PREDICTED: protein COBRA-like [Jatropha curcas]
7 Hb_000866_070 0.1116514999 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
8 Hb_000959_300 0.1197782217 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_002488_010 0.1214362997 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
10 Hb_005772_030 0.1219644868 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
11 Hb_000968_060 0.1237946936 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_000167_040 0.1238316433 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
13 Hb_001053_080 0.1267102844 - - OsCesA3 protein [Morus notabilis]
14 Hb_000001_090 0.1276074362 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
15 Hb_000984_140 0.1293303986 - - PREDICTED: xylulose kinase [Jatropha curcas]
16 Hb_000964_170 0.1315146224 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
17 Hb_000977_290 0.1325052845 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
18 Hb_012762_060 0.1357450627 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
19 Hb_001140_180 0.1357584701 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
20 Hb_002942_230 0.1394970331 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_000562_100 Hb_000562_100 Hb_012353_040 Hb_012353_040 Hb_000562_100--Hb_012353_040 Hb_000997_070 Hb_000997_070 Hb_000562_100--Hb_000997_070 Hb_003849_120 Hb_003849_120 Hb_000562_100--Hb_003849_120 Hb_000012_400 Hb_000012_400 Hb_000562_100--Hb_000012_400 Hb_004052_180 Hb_004052_180 Hb_000562_100--Hb_004052_180 Hb_000866_070 Hb_000866_070 Hb_000562_100--Hb_000866_070 Hb_005772_030 Hb_005772_030 Hb_012353_040--Hb_005772_030 Hb_012353_040--Hb_000997_070 Hb_012353_040--Hb_003849_120 Hb_004204_210 Hb_004204_210 Hb_012353_040--Hb_004204_210 Hb_012353_040--Hb_000866_070 Hb_000167_040 Hb_000167_040 Hb_000997_070--Hb_000167_040 Hb_001195_310 Hb_001195_310 Hb_000997_070--Hb_001195_310 Hb_010381_020 Hb_010381_020 Hb_000997_070--Hb_010381_020 Hb_001969_140 Hb_001969_140 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_003849_120--Hb_000012_400 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_009078_020 Hb_009078_020 Hb_003849_120--Hb_009078_020 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_004907_090 Hb_004907_090 Hb_004052_180--Hb_004907_090 Hb_000001_090 Hb_000001_090 Hb_004052_180--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_004052_180--Hb_001053_080 Hb_000959_300 Hb_000959_300 Hb_004052_180--Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_004052_180--Hb_002488_010 Hb_000866_070--Hb_000001_090 Hb_002942_230 Hb_002942_230 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000866_070--Hb_000968_060 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_000866_070--Hb_002217_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66485 12.7862 20.6109 32.5407 12.0982 9.14817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18545 1.163 1.55998 12.3522 20.5604

CAGE analysis