Hb_000563_070

Information

Type -
Description -
Location Contig563: 26840-29349
Sequence    

Annotation

kegg
ID tcc:TCM_022135
description RING/U-box superfamily protein isoform 1
nr
ID XP_011077485.1
description PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
swissprot
ID Q9S752
description Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1
trembl
ID A0A061ETT4
description RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_022135 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_070 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
2 Hb_000264_250 0.0105629247 - - thioredoxin family protein [Arabidopsis thaliana]
3 Hb_002551_010 0.0214328514 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005747_020 0.0269499627 - - bacterial-induced peroxidase [Gossypium schwendimanii]
5 Hb_094462_010 0.0272670922 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
6 Hb_106528_010 0.0311061176 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
7 Hb_005747_040 0.0326166306 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
8 Hb_000419_080 0.044469321 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
9 Hb_001114_290 0.0515214166 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001114_220 0.0535789502 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_001032_060 0.0570680577 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
12 Hb_000022_270 0.0605243958 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003685_060 0.0630560361 - - PREDICTED: laccase-15 [Jatropha curcas]
14 Hb_122025_010 0.0631666279 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
15 Hb_001604_140 0.0658654916 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
16 Hb_173102_010 0.069840446 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000201_080 0.0705146055 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_001410_090 0.0721591645 - - transferase, putative [Ricinus communis]
19 Hb_126040_020 0.0754538011 - - -
20 Hb_000488_040 0.076377062 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000563_070 Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000563_070--Hb_000264_250 Hb_002551_010 Hb_002551_010 Hb_000563_070--Hb_002551_010 Hb_005747_020 Hb_005747_020 Hb_000563_070--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000563_070--Hb_094462_010 Hb_106528_010 Hb_106528_010 Hb_000563_070--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_000563_070--Hb_005747_040 Hb_000264_250--Hb_002551_010 Hb_000264_250--Hb_106528_010 Hb_000264_250--Hb_005747_040 Hb_000264_250--Hb_005747_020 Hb_000264_250--Hb_094462_010 Hb_002551_010--Hb_106528_010 Hb_002551_010--Hb_005747_040 Hb_001114_290 Hb_001114_290 Hb_002551_010--Hb_001114_290 Hb_002551_010--Hb_005747_020 Hb_005747_020--Hb_106528_010 Hb_005747_020--Hb_094462_010 Hb_005747_020--Hb_005747_040 Hb_000022_270 Hb_000022_270 Hb_094462_010--Hb_000022_270 Hb_003685_060 Hb_003685_060 Hb_094462_010--Hb_003685_060 Hb_000419_080 Hb_000419_080 Hb_094462_010--Hb_000419_080 Hb_001604_140 Hb_001604_140 Hb_094462_010--Hb_001604_140 Hb_106528_010--Hb_005747_040 Hb_106528_010--Hb_001114_290 Hb_173102_010 Hb_173102_010 Hb_106528_010--Hb_173102_010 Hb_005747_040--Hb_001114_290 Hb_005747_040--Hb_173102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0805104 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.753243 0

CAGE analysis