Hb_000563_110

Information

Type -
Description -
Location Contig563: 56019-63040
Sequence    

Annotation

kegg
ID gmx:100814569
description MLP-like protein 34-like
nr
ID XP_006586622.1
description PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
swissprot
ID O50001
description Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1
trembl
ID I1L0V9
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0006952
description major allergen pru

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48882: 59008-59807 , PASA_asmbl_48883: 62513-62956
cDNA
(Sanger)
(ID:Location)		 004_P16.ab1: 59018-59798 , 009_K04.ab1: 59026-59792 , 026_H22.ab1: 59022-59807 , 029_L24.ab1: 59022-59780 , 033_F05.ab1: 59008-59798 , 043_P08.ab1: 59022-59791 , 052_O10.ab1: 59022-59807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_110 0.0 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
2 Hb_001652_090 0.0417445351 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008642_020 0.0480489229 - - sterol desaturase, putative [Ricinus communis]
4 Hb_000175_110 0.0502864607 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
5 Hb_000005_390 0.0532577069 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
6 Hb_002045_020 0.0552257924 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
7 Hb_012368_040 0.0596170592 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011218_020 0.0599499534 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007558_060 0.0624313931 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
10 Hb_003464_040 0.0678025247 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_028995_020 0.0709543754 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
12 Hb_003226_040 0.0723983598 - - PREDICTED: endoglucanase 17 [Populus euphratica]
13 Hb_000023_030 0.0725477946 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
14 Hb_006332_030 0.0755613291 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
15 Hb_005550_060 0.0772051047 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
16 Hb_005170_050 0.0831543809 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
17 Hb_017959_020 0.0833852328 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
18 Hb_001677_070 0.0869317036 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
19 Hb_006485_020 0.0882933642 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
20 Hb_000544_150 0.0891097636 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_110 Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_000563_110--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000005_390 Hb_000005_390 Hb_000563_110--Hb_000005_390 Hb_002045_020 Hb_002045_020 Hb_000563_110--Hb_002045_020 Hb_012368_040 Hb_012368_040 Hb_000563_110--Hb_012368_040 Hb_001652_090--Hb_000005_390 Hb_001652_090--Hb_012368_040 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020 Hb_001652_090--Hb_002045_020 Hb_007558_060 Hb_007558_060 Hb_008642_020--Hb_007558_060 Hb_008642_020--Hb_000005_390 Hb_005550_060 Hb_005550_060 Hb_008642_020--Hb_005550_060 Hb_005170_050 Hb_005170_050 Hb_008642_020--Hb_005170_050 Hb_000544_150 Hb_000544_150 Hb_008642_020--Hb_000544_150 Hb_028995_020 Hb_028995_020 Hb_000175_110--Hb_028995_020 Hb_001677_070 Hb_001677_070 Hb_000175_110--Hb_001677_070 Hb_000175_110--Hb_011218_020 Hb_000175_110--Hb_012368_040 Hb_000175_110--Hb_001652_090 Hb_000005_390--Hb_005550_060 Hb_000005_390--Hb_000544_150 Hb_006485_020 Hb_006485_020 Hb_000005_390--Hb_006485_020 Hb_000023_030 Hb_000023_030 Hb_002045_020--Hb_000023_030 Hb_003226_040 Hb_003226_040 Hb_002045_020--Hb_003226_040 Hb_002045_020--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_002045_020--Hb_000005_160 Hb_003464_040 Hb_003464_040 Hb_012368_040--Hb_003464_040 Hb_012368_040--Hb_003226_040 Hb_000193_170 Hb_000193_170 Hb_012368_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_012368_040--Hb_000375_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13891 282.501 38.6115 0 0.0424442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0248267 0.0390674 0.0369522 0.684468 13.9986

CAGE analysis