Hb_000563_200

Information

Type -
Description -
Location Contig563: 128395-131262
Sequence    

Annotation

kegg
ID tcc:TCM_021269
description hypothetical protein
nr
ID KDP27850.1
description hypothetical protein JCGZ_18930 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6G4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18930 PE=4 SV=1
Gene Ontology
ID GO:0044444
description hypothetical protein JCGZ_18930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48900: 128159-130583
cDNA
(Sanger)
(ID:Location)		 026_O24r.ab1: 132096-132705

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_200 0.0 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
2 Hb_001410_060 0.0752599467 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
3 Hb_145880_020 0.0819178941 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
4 Hb_001353_010 0.0823356135 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
5 Hb_148209_010 0.0858694507 - - RAS-related GTP-binding family protein [Populus trichocarpa]
6 Hb_001123_160 0.0861027338 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_003880_040 0.0862902947 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
8 Hb_001489_110 0.0888503059 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
9 Hb_002301_160 0.094421527 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
10 Hb_000028_350 0.0951607456 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
11 Hb_008232_010 0.097773749 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
12 Hb_000808_190 0.0993718999 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
13 Hb_002303_060 0.1004146822 - - conserved hypothetical protein [Ricinus communis]
14 Hb_186982_040 0.1021757051 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
15 Hb_004627_030 0.1024022634 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
16 Hb_000009_290 0.1041991217 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
17 Hb_002284_230 0.1064883649 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
18 Hb_045003_010 0.106516238 - - Stomatin-1, putative [Ricinus communis]
19 Hb_000849_130 0.1065585257 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
20 Hb_000060_050 0.1065910554 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_200 Hb_000563_200 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_145880_020--Hb_001410_060 Hb_145880_020--Hb_148209_010 Hb_000110_120 Hb_000110_120 Hb_145880_020--Hb_000110_120 Hb_002303_060 Hb_002303_060 Hb_145880_020--Hb_002303_060 Hb_004627_030 Hb_004627_030 Hb_145880_020--Hb_004627_030 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_001353_010--Hb_002303_060 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_003291_020 Hb_003291_020 Hb_148209_010--Hb_003291_020 Hb_148209_010--Hb_002303_060 Hb_148209_010--Hb_001123_160 Hb_148209_010--Hb_000922_040 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_001123_160--Hb_003291_020 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_000016_170 Hb_000016_170 Hb_003880_040--Hb_000016_170 Hb_000574_130 Hb_000574_130 Hb_003880_040--Hb_000574_130 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68414 2.20716 3.57727 12.4841 2.33192 4.0385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.55577 11.3752 7.63008 6.44319 5.10396

CAGE analysis