Hb_000563_210

Information

Type -
Description -
Location Contig563: 131120-132760
Sequence    

Annotation

kegg
ID rcu:RCOM_0682620
description hypothetical protein
nr
ID XP_012083995.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
swissprot
ID Q6NPF4
description Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana GN=MED20A PE=1 SV=1
trembl
ID A0A067K7Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18929 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48901: 130956-132714
cDNA
(Sanger)
(ID:Location)		 026_O24.ab1: 131002-131784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_210 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
2 Hb_001484_060 0.0912759898 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
3 Hb_000076_120 0.1080862415 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
4 Hb_009775_050 0.1089147536 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
5 Hb_000053_130 0.111055216 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
6 Hb_001341_050 0.1152544743 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
7 Hb_001124_120 0.1178203892 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
8 Hb_003044_100 0.1191991622 - - hypothetical protein F383_08446 [Gossypium arboreum]
9 Hb_000003_650 0.12105459 - - malic enzyme, putative [Ricinus communis]
10 Hb_008887_050 0.124310364 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
11 Hb_005503_030 0.124882145 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
12 Hb_171900_100 0.1251943367 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
13 Hb_001616_080 0.1255293101 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
14 Hb_000696_300 0.1266383314 - - hypothetical protein EUGRSUZ_J01717 [Eucalyptus grandis]
15 Hb_001329_230 0.1267909396 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
16 Hb_012092_010 0.1279658433 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_002205_120 0.1290776818 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Jatropha curcas]
18 Hb_031939_010 0.129372449 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_000012_020 0.1301728385 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_005784_080 0.1315768013 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000563_210 Hb_000563_210 Hb_001484_060 Hb_001484_060 Hb_000563_210--Hb_001484_060 Hb_000076_120 Hb_000076_120 Hb_000563_210--Hb_000076_120 Hb_009775_050 Hb_009775_050 Hb_000563_210--Hb_009775_050 Hb_000053_130 Hb_000053_130 Hb_000563_210--Hb_000053_130 Hb_001341_050 Hb_001341_050 Hb_000563_210--Hb_001341_050 Hb_001124_120 Hb_001124_120 Hb_000563_210--Hb_001124_120 Hb_000676_050 Hb_000676_050 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_000933_150 Hb_000933_150 Hb_001484_060--Hb_000933_150 Hb_001484_060--Hb_001124_120 Hb_002349_040 Hb_002349_040 Hb_001484_060--Hb_002349_040 Hb_000058_100 Hb_000058_100 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_004310_130 Hb_004310_130 Hb_000076_120--Hb_004310_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_007218_080 Hb_007218_080 Hb_000076_120--Hb_007218_080 Hb_001329_230 Hb_001329_230 Hb_009775_050--Hb_001329_230 Hb_009118_010 Hb_009118_010 Hb_009775_050--Hb_009118_010 Hb_000268_020 Hb_000268_020 Hb_009775_050--Hb_000268_020 Hb_002272_180 Hb_002272_180 Hb_009775_050--Hb_002272_180 Hb_009775_050--Hb_001341_050 Hb_009775_050--Hb_000076_120 Hb_000053_130--Hb_150360_030 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_007668_040 Hb_007668_040 Hb_001341_050--Hb_007668_040 Hb_000364_060 Hb_000364_060 Hb_001341_050--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_001124_120--Hb_150360_030 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_001124_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.578 0.356138 2.07137 0.564969 2.74886 3.45733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94264 1.41076 1.21956 0.960908 0.676427

CAGE analysis