Hb_000563_220

Information

Type -
Description -
Location Contig563: 132872-135693
Sequence    

Annotation

kegg
ID rcu:RCOM_0682610
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID CAN73616.1
description hypothetical protein VITISV_004111 [Vitis vinifera]
swissprot
ID Q0WRB2
description Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1
trembl
ID A5AP53
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004111 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_220 0.0 - - hypothetical protein VITISV_004111 [Vitis vinifera]
2 Hb_003609_010 0.2167054761 - - -
3 Hb_083569_010 0.222215683 - - -
4 Hb_094101_010 0.2612528285 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
5 Hb_024828_040 0.2783603512 - - -
6 Hb_002904_090 0.2825184537 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
7 Hb_179763_020 0.2895045857 - - -
8 Hb_123915_050 0.2980859918 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_002168_020 0.3164887645 - - ATP binding protein, putative [Ricinus communis]
10 Hb_009780_090 0.3201896486 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
11 Hb_161994_020 0.3204730694 - - -
12 Hb_000808_060 0.3225396754 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
13 Hb_020730_010 0.3275357332 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
14 Hb_021583_010 0.3295959229 - - -
15 Hb_075812_010 0.3381377438 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
16 Hb_003581_110 0.3381452179 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
17 Hb_002609_180 0.3397580442 - - -
18 Hb_017170_020 0.3410400775 - - PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
19 Hb_074152_010 0.3433471526 - - -
20 Hb_011161_070 0.3452877595 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000563_220 Hb_000563_220 Hb_003609_010 Hb_003609_010 Hb_000563_220--Hb_003609_010 Hb_083569_010 Hb_083569_010 Hb_000563_220--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_000563_220--Hb_094101_010 Hb_024828_040 Hb_024828_040 Hb_000563_220--Hb_024828_040 Hb_002904_090 Hb_002904_090 Hb_000563_220--Hb_002904_090 Hb_179763_020 Hb_179763_020 Hb_000563_220--Hb_179763_020 Hb_003609_010--Hb_083569_010 Hb_003609_010--Hb_094101_010 Hb_003609_010--Hb_002904_090 Hb_000317_090 Hb_000317_090 Hb_003609_010--Hb_000317_090 Hb_007904_190 Hb_007904_190 Hb_003609_010--Hb_007904_190 Hb_083569_010--Hb_094101_010 Hb_021583_010 Hb_021583_010 Hb_083569_010--Hb_021583_010 Hb_009780_090 Hb_009780_090 Hb_083569_010--Hb_009780_090 Hb_003311_050 Hb_003311_050 Hb_083569_010--Hb_003311_050 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_003311_050 Hb_094101_010--Hb_009780_090 Hb_094101_010--Hb_021583_010 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_166786_030 Hb_166786_030 Hb_024828_040--Hb_166786_030 Hb_003859_010 Hb_003859_010 Hb_024828_040--Hb_003859_010 Hb_075812_010 Hb_075812_010 Hb_024828_040--Hb_075812_010 Hb_001565_100 Hb_001565_100 Hb_024828_040--Hb_001565_100 Hb_004534_020 Hb_004534_020 Hb_024828_040--Hb_004534_020 Hb_000816_110 Hb_000816_110 Hb_024828_040--Hb_000816_110 Hb_019282_010 Hb_019282_010 Hb_002904_090--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_002904_090--Hb_001427_180 Hb_176117_010 Hb_176117_010 Hb_002904_090--Hb_176117_010 Hb_000014_130 Hb_000014_130 Hb_002904_090--Hb_000014_130 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_041237_010 Hb_041237_010 Hb_002904_090--Hb_041237_010 Hb_123915_050 Hb_123915_050 Hb_179763_020--Hb_123915_050 Hb_000227_030 Hb_000227_030 Hb_179763_020--Hb_000227_030 Hb_002188_100 Hb_002188_100 Hb_179763_020--Hb_002188_100 Hb_039635_010 Hb_039635_010 Hb_179763_020--Hb_039635_010 Hb_000463_050 Hb_000463_050 Hb_179763_020--Hb_000463_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0301654 0.0253065 0 0 0.0565948 0.0533734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0546024 0 0 0

CAGE analysis