Hb_000563_240

Information

Type -
Description -
Location Contig563: 148749-153192
Sequence    

Annotation

kegg
ID rcu:RCOM_0682590
description 60S ribosomal protein L19, putative
nr
ID XP_012083992.1
description PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID A0A067JV55
description Ribosomal protein L19 OS=Jatropha curcas GN=JCGZ_18926 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48906: 148733-153290 , PASA_asmbl_48907: 148810-153212 , PASA_asmbl_48908: 152235-152595
cDNA
(Sanger)
(ID:Location)		 002_E08.ab1: 148850-153290 , 013_C07.ab1: 148938-153282 , 014_I17.ab1: 148952-153252 , 019_K15.ab1: 149290-153290 , 022_B20.ab1: 149068-153257 , 033_D13.ab1: 148851-153282 , 037_C22.ab1: 148845-153257 , 050_M23.ab1: 149293-153252

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_240 0.0 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
2 Hb_155764_020 0.0608253942 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
3 Hb_001248_080 0.0740366222 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_000099_060 0.0860205183 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
5 Hb_007575_070 0.086117313 - - Histone H3.2 [Glycine soja]
6 Hb_011311_010 0.0906844464 - - 60S ribosomal protein L27C [Hevea brasiliensis]
7 Hb_001268_140 0.0911177495 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007944_040 0.0918284213 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
9 Hb_005590_020 0.0918306464 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
10 Hb_001300_270 0.0920786517 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
11 Hb_000134_330 0.0923786605 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
12 Hb_003579_030 0.0967959208 - - phosphatase 2C family protein [Populus trichocarpa]
13 Hb_000264_090 0.0977333286 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
14 Hb_148930_010 0.100021096 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
15 Hb_001634_040 0.1000605125 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
16 Hb_002097_060 0.1004215301 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_001863_400 0.1029754074 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
18 Hb_017862_010 0.1032759301 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
19 Hb_004109_020 0.1050401153 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
20 Hb_001016_090 0.1051343245 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000563_240 Hb_000563_240 Hb_155764_020 Hb_155764_020 Hb_000563_240--Hb_155764_020 Hb_001248_080 Hb_001248_080 Hb_000563_240--Hb_001248_080 Hb_000099_060 Hb_000099_060 Hb_000563_240--Hb_000099_060 Hb_007575_070 Hb_007575_070 Hb_000563_240--Hb_007575_070 Hb_011311_010 Hb_011311_010 Hb_000563_240--Hb_011311_010 Hb_001268_140 Hb_001268_140 Hb_000563_240--Hb_001268_140 Hb_155764_020--Hb_001248_080 Hb_155764_020--Hb_001268_140 Hb_155764_020--Hb_000099_060 Hb_000134_330 Hb_000134_330 Hb_155764_020--Hb_000134_330 Hb_001300_270 Hb_001300_270 Hb_155764_020--Hb_001300_270 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000099_060--Hb_000134_330 Hb_002182_060 Hb_002182_060 Hb_000099_060--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_000099_060--Hb_008173_090 Hb_000970_010 Hb_000970_010 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_001634_040 Hb_001634_040 Hb_007575_070--Hb_001634_040 Hb_000805_130 Hb_000805_130 Hb_007575_070--Hb_000805_130 Hb_007944_040 Hb_007944_040 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_007575_070--Hb_000062_390 Hb_001045_080 Hb_001045_080 Hb_007575_070--Hb_001045_080 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_011311_010--Hb_007944_040 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_001268_140--Hb_001300_270 Hb_001268_140--Hb_000134_330 Hb_001268_140--Hb_007944_040 Hb_001268_140--Hb_001045_080 Hb_001268_140--Hb_001269_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
610.225 284.828 226.78 146.023 368.516 484.09
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1174.02 2236.6 1062.06 380.227 155.988

CAGE analysis