Hb_000563_250

Information

Type -
Description -
Location Contig563: 154165-154737
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00880g
description glycine-rich family protein
nr
ID XP_012083991.1
description PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48909: 153974-155010
cDNA
(Sanger)
(ID:Location)		 028_J14.ab1: 154007-154696 , 035_P13.ab1: 154007-154696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_250 0.0 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
2 Hb_001616_030 0.071815771 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
3 Hb_000120_680 0.0739907412 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
4 Hb_000240_090 0.0798167787 - - Rab5 [Hevea brasiliensis]
5 Hb_021409_030 0.0799548786 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
6 Hb_000086_280 0.0854171649 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
7 Hb_021409_160 0.08545604 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
8 Hb_002284_200 0.0908164073 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
9 Hb_000617_150 0.0924227295 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
10 Hb_011173_050 0.0961453797 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
11 Hb_129204_030 0.0966503004 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
12 Hb_010407_180 0.0967839819 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
13 Hb_000120_960 0.0977712363 - - isocitrate dehydrogenase, putative [Ricinus communis]
14 Hb_000117_090 0.0984250598 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
15 Hb_000622_090 0.0995643262 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
16 Hb_000072_080 0.0997008237 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
17 Hb_000175_060 0.100153382 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
18 Hb_004375_140 0.1007376937 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
19 Hb_001085_120 0.1011294501 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
20 Hb_002660_070 0.1024946679 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000563_250 Hb_000563_250 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000240_090 Hb_000240_090 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_000617_150 Hb_000617_150 Hb_000120_680--Hb_000617_150 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_000240_090--Hb_021409_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_001085_120 Hb_001085_120 Hb_000086_280--Hb_001085_120 Hb_001776_160 Hb_001776_160 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120 Hb_002056_060 Hb_002056_060 Hb_021409_160--Hb_002056_060 Hb_021409_160--Hb_000120_680 Hb_021409_160--Hb_000622_090 Hb_000125_030 Hb_000125_030 Hb_021409_160--Hb_000125_030 Hb_021409_160--Hb_000240_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5047 15.3763 15.1953 13.0425 19.0006 12.7459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9028 60.0402 59.8131 13.7459 16.8216

CAGE analysis