Hb_000563_260

Information

Type -
Description -
Location Contig563: 166131-166610
Sequence    

Annotation

kegg
ID cit:102608276
description uncharacterized LOC102608276
nr
ID XP_012081735.1
description PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A2Q523
description Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC158497g46v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_260 0.0 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
2 Hb_002588_040 0.1319032906 - - Pathogenesis-related protein 1 [Theobroma cacao]
3 Hb_001348_230 0.1392862397 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
4 Hb_001146_060 0.1398641438 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
5 Hb_000352_160 0.1489828832 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029879_090 0.1493019818 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
7 Hb_001369_210 0.1536690933 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
8 Hb_007426_050 0.1611190439 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
9 Hb_027337_120 0.1902496831 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
10 Hb_002150_050 0.1955923778 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000033_040 0.2095868035 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001767_050 0.2133214633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001143_070 0.2250625996 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000594_090 0.2261971418 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
15 Hb_010589_050 0.2269745258 - - -
16 Hb_000042_100 0.2282216846 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
17 Hb_089100_050 0.2295046891 - - -
18 Hb_061383_010 0.2304138478 - - beta-1,3-glucanase [Hevea brasiliensis]
19 Hb_141194_010 0.2315571264 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
20 Hb_000450_020 0.2362943498 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000563_260 Hb_000563_260 Hb_002588_040 Hb_002588_040 Hb_000563_260--Hb_002588_040 Hb_001348_230 Hb_001348_230 Hb_000563_260--Hb_001348_230 Hb_001146_060 Hb_001146_060 Hb_000563_260--Hb_001146_060 Hb_000352_160 Hb_000352_160 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090 Hb_001369_210 Hb_001369_210 Hb_000563_260--Hb_001369_210 Hb_002588_040--Hb_001146_060 Hb_002588_040--Hb_001348_230 Hb_002588_040--Hb_000352_160 Hb_002588_040--Hb_001369_210 Hb_001767_050 Hb_001767_050 Hb_002588_040--Hb_001767_050 Hb_001348_230--Hb_000352_160 Hb_001348_230--Hb_001369_210 Hb_001348_230--Hb_001146_060 Hb_001143_070 Hb_001143_070 Hb_001348_230--Hb_001143_070 Hb_001146_060--Hb_001369_210 Hb_001146_060--Hb_000352_160 Hb_001146_060--Hb_001767_050 Hb_000352_160--Hb_001369_210 Hb_000352_160--Hb_001767_050 Hb_000352_160--Hb_001143_070 Hb_007426_050 Hb_007426_050 Hb_029879_090--Hb_007426_050 Hb_141194_010 Hb_141194_010 Hb_029879_090--Hb_141194_010 Hb_000594_090 Hb_000594_090 Hb_029879_090--Hb_000594_090 Hb_000103_030 Hb_000103_030 Hb_029879_090--Hb_000103_030 Hb_029879_090--Hb_001348_230 Hb_001369_210--Hb_001767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0612229 0 0 0.218497 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287284 3.94934 2.08452 0.235495 0

CAGE analysis