Hb_000563_290

Information

Type -
Description -
Location Contig563: 178332-179363
Sequence    

Annotation

kegg
ID rcu:RCOM_0953390
description hypothetical protein
nr
ID AFP55574.1
description non-ltr retroelement reverse transcriptase [Rosa rugosa]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_290 0.0 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
2 Hb_000195_050 0.0342269737 - - -
3 Hb_004429_040 0.0661242462 - - -
4 Hb_038675_010 0.0731604193 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
5 Hb_059069_010 0.0742782375 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
6 Hb_002490_040 0.0749497318 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
7 Hb_011360_100 0.0909321539 - - -
8 Hb_004458_050 0.1048609459 - - -
9 Hb_005741_010 0.1095823483 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
10 Hb_001241_060 0.1127311319 - - -
11 Hb_012194_010 0.1221051531 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_006275_030 0.1441263155 - - -
13 Hb_000574_020 0.1471647783 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002463_080 0.1548563055 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_003556_020 0.1580667624 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
16 Hb_010024_010 0.1841962182 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_004317_050 0.187706302 - - -
18 Hb_022593_060 0.1955558626 - - -
19 Hb_010222_010 0.2050660557 - - -
20 Hb_000831_040 0.2052631566 - - -

Gene co-expression network

sample Hb_000563_290 Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_000563_290--Hb_000195_050 Hb_004429_040 Hb_004429_040 Hb_000563_290--Hb_004429_040 Hb_038675_010 Hb_038675_010 Hb_000563_290--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_000563_290--Hb_059069_010 Hb_002490_040 Hb_002490_040 Hb_000563_290--Hb_002490_040 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_001241_060 Hb_001241_060 Hb_004429_040--Hb_001241_060 Hb_004429_040--Hb_002490_040 Hb_004429_040--Hb_000195_050 Hb_010024_010 Hb_010024_010 Hb_004429_040--Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_004429_040--Hb_022593_060 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_012194_010 Hb_002490_040--Hb_001241_060 Hb_002490_040--Hb_000195_050 Hb_002490_040--Hb_038675_010 Hb_002490_040--Hb_059069_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_005741_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0648945 0 0 0 0 0.201185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis