Hb_000563_320

Information

Type -
Description -
Location Contig563: 189447-192603
Sequence    

Annotation

kegg
ID rcu:RCOM_0682260
description chaperone binding protein, putative
nr
ID XP_012083989.1
description PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
swissprot
ID F1RBN2
description Sperm-associated antigen 1A OS=Danio rerio GN=spag1a PE=2 SV=1
trembl
ID A0A067JYI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18923 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48915: 189491-192427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_320 0.0 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
2 Hb_000016_250 0.040785754 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
3 Hb_001157_040 0.0503271579 - - casein kinase, putative [Ricinus communis]
4 Hb_031527_040 0.0559029632 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_005779_060 0.0560918026 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
6 Hb_001242_060 0.0570986246 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
7 Hb_011995_010 0.0576187112 - - dc50, putative [Ricinus communis]
8 Hb_007691_030 0.0599336821 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
9 Hb_001163_050 0.0607364061 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
10 Hb_010618_010 0.061363434 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_001248_060 0.0621557843 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002518_280 0.0637015493 - - phosphate transporter [Manihot esculenta]
13 Hb_000416_040 0.0645579957 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
14 Hb_000096_070 0.0658329127 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
15 Hb_002863_050 0.0666994806 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_000152_380 0.0668707107 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
17 Hb_000757_060 0.0680913559 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
18 Hb_000099_080 0.0681941432 - - kinesin light chain, putative [Ricinus communis]
19 Hb_015934_040 0.0683330446 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
20 Hb_000580_180 0.0684017378 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000563_320 Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_000563_320--Hb_000016_250 Hb_001157_040 Hb_001157_040 Hb_000563_320--Hb_001157_040 Hb_031527_040 Hb_031527_040 Hb_000563_320--Hb_031527_040 Hb_005779_060 Hb_005779_060 Hb_000563_320--Hb_005779_060 Hb_001242_060 Hb_001242_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_000016_250--Hb_005779_060 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_000016_250--Hb_001242_060 Hb_000016_250--Hb_031527_040 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_031527_040--Hb_001242_060 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_031527_040--Hb_001157_040 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_001242_060--Hb_005779_060 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7176 33.1964 25.0567 25.6886 37.23 37.5322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.935 45.8822 39.4119 21.3911 22.091

CAGE analysis