Hb_000563_380

Information

Type -
Description -
Location Contig563: 253950-254303
Sequence    

Annotation

kegg
ID cic:CICLE_v10007206mg
description hypothetical protein
nr
ID XP_006419504.1
description hypothetical protein CICLE_v10007206mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U0H4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007206mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_380 0.0 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
2 Hb_008931_020 0.1002378189 - - Receptor like protein 46, putative [Theobroma cacao]
3 Hb_001031_020 0.11490782 - - hypothetical protein VITISV_000631 [Vitis vinifera]
4 Hb_005588_010 0.1154212563 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
5 Hb_045414_010 0.1215709228 - - unnamed protein product [Vitis vinifera]
6 Hb_000635_170 0.1242174335 - - cytochrome P450, putative [Ricinus communis]
7 Hb_033153_010 0.1315827949 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
8 Hb_011671_290 0.1332444326 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
9 Hb_008897_020 0.1352313729 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
10 Hb_000959_290 0.1393031927 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
11 Hb_000414_100 0.1401739431 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
12 Hb_005643_020 0.1426558825 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_000563_460 0.1435459887 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
14 Hb_028487_080 0.1475431419 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_007328_010 0.1490677094 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
16 Hb_001405_260 0.1522293691 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
17 Hb_000522_120 0.1527832032 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
18 Hb_002572_060 0.1530432194 - - conserved hypothetical protein [Ricinus communis]
19 Hb_091913_010 0.1536470159 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_031862_150 0.1554184622 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_380 Hb_000563_380 Hb_008931_020 Hb_008931_020 Hb_000563_380--Hb_008931_020 Hb_001031_020 Hb_001031_020 Hb_000563_380--Hb_001031_020 Hb_005588_010 Hb_005588_010 Hb_000563_380--Hb_005588_010 Hb_045414_010 Hb_045414_010 Hb_000563_380--Hb_045414_010 Hb_000635_170 Hb_000635_170 Hb_000563_380--Hb_000635_170 Hb_033153_010 Hb_033153_010 Hb_000563_380--Hb_033153_010 Hb_011671_290 Hb_011671_290 Hb_008931_020--Hb_011671_290 Hb_008931_020--Hb_000635_170 Hb_000959_290 Hb_000959_290 Hb_008931_020--Hb_000959_290 Hb_000045_110 Hb_000045_110 Hb_008931_020--Hb_000045_110 Hb_002572_060 Hb_002572_060 Hb_008931_020--Hb_002572_060 Hb_028487_080 Hb_028487_080 Hb_001031_020--Hb_028487_080 Hb_001031_020--Hb_008931_020 Hb_001031_020--Hb_000635_170 Hb_004108_200 Hb_004108_200 Hb_001031_020--Hb_004108_200 Hb_004162_030 Hb_004162_030 Hb_001031_020--Hb_004162_030 Hb_005643_020 Hb_005643_020 Hb_005588_010--Hb_005643_020 Hb_001405_260 Hb_001405_260 Hb_005588_010--Hb_001405_260 Hb_005648_030 Hb_005648_030 Hb_005588_010--Hb_005648_030 Hb_000522_120 Hb_000522_120 Hb_005588_010--Hb_000522_120 Hb_005588_010--Hb_033153_010 Hb_022630_010 Hb_022630_010 Hb_005588_010--Hb_022630_010 Hb_091913_010 Hb_091913_010 Hb_045414_010--Hb_091913_010 Hb_008897_020 Hb_008897_020 Hb_045414_010--Hb_008897_020 Hb_045414_010--Hb_005643_020 Hb_045414_010--Hb_005588_010 Hb_002864_040 Hb_002864_040 Hb_045414_010--Hb_002864_040 Hb_013057_010 Hb_013057_010 Hb_000635_170--Hb_013057_010 Hb_000336_170 Hb_000336_170 Hb_000635_170--Hb_000336_170 Hb_000635_170--Hb_028487_080 Hb_000635_170--Hb_000045_110 Hb_000414_100 Hb_000414_100 Hb_033153_010--Hb_000414_100 Hb_033153_010--Hb_005648_030 Hb_002760_060 Hb_002760_060 Hb_033153_010--Hb_002760_060 Hb_033153_010--Hb_001405_260 Hb_007850_050 Hb_007850_050 Hb_033153_010--Hb_007850_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107039 29.0349 1.15754 1.41921 0.108743 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 1.34529

CAGE analysis