Hb_000563_420

Information

Type -
Description -
Location Contig563: 305149-313884
Sequence    

Annotation

kegg
ID rcu:RCOM_0682070
description protein with unknown function (EC:1.3.99.10)
nr
ID XP_012083983.1
description PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
swissprot
ID Q8RWZ3
description Probable acyl-CoA dehydrogenase IBR3 OS=Arabidopsis thaliana GN=IBR3 PE=1 SV=1
trembl
ID A0A067K6E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18915 PE=3 SV=1
Gene Ontology
ID GO:0003995
description acyl- dehydrogenase family member 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48920: 305383-313901 , PASA_asmbl_48923: 308636-308899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_420 0.0 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
2 Hb_000864_030 0.0674773306 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_004800_180 0.0702165211 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
4 Hb_055235_020 0.0717019586 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
5 Hb_000115_280 0.0724068582 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
6 Hb_000318_120 0.0728356378 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
7 Hb_007044_110 0.0737196491 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000679_020 0.0762219756 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
9 Hb_004920_090 0.0769731079 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000563_130 0.0785036744 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_000523_080 0.0794863794 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
12 Hb_031284_010 0.0797265222 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
13 Hb_007305_020 0.0799288881 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
14 Hb_000025_690 0.0812222071 - - spliceosome associated protein, putative [Ricinus communis]
15 Hb_001089_070 0.0824106323 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
16 Hb_000174_170 0.0840399253 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
17 Hb_000205_260 0.0840940035 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
18 Hb_008059_010 0.0849537146 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
19 Hb_000134_270 0.0857498855 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
20 Hb_003943_020 0.08596472 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_420 Hb_000563_420 Hb_000864_030 Hb_000864_030 Hb_000563_420--Hb_000864_030 Hb_004800_180 Hb_004800_180 Hb_000563_420--Hb_004800_180 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000115_280 Hb_000115_280 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_000679_020 Hb_000679_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_000864_030--Hb_004800_180 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000864_030--Hb_000115_280 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000181_100 Hb_000181_100 Hb_004800_180--Hb_000181_100 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_004800_180--Hb_000679_020 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_000457_230 Hb_000457_230 Hb_055235_020--Hb_000457_230 Hb_031284_010 Hb_031284_010 Hb_000115_280--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_000115_280--Hb_003186_020 Hb_000115_280--Hb_008059_010 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_000318_120--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_007044_110--Hb_004976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.814 14.7616 19.4716 9.65346 21.0961 13.5665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9434 6.80114 7.29899 15.0217 20.4298

CAGE analysis