Hb_000563_460

Information

Type -
Description -
Location Contig563: 341707-342597
Sequence    

Annotation

kegg
ID rcu:RCOM_0682030
description ring finger protein, putative
nr
ID XP_012083978.1
description PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
swissprot
ID Q8L9T5
description RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2
trembl
ID A0A067JV40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48928: 341399-342681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_460 0.0 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
2 Hb_002311_490 0.0904604525 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
3 Hb_000016_220 0.116950502 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
4 Hb_011671_290 0.1218630098 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
5 Hb_009247_020 0.1243922654 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
6 Hb_073870_020 0.1314834382 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
7 Hb_000506_140 0.1331835984 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
8 Hb_002849_030 0.1348490575 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
9 Hb_000414_100 0.1355360059 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
10 Hb_027214_060 0.1390963072 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
11 Hb_000227_410 0.1401306413 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
12 Hb_000796_200 0.1420739212 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
13 Hb_158123_010 0.1431692369 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_000563_380 0.1435459887 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
15 Hb_016404_010 0.1450569415 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_000465_330 0.1455665808 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
17 Hb_006483_050 0.1456239682 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
18 Hb_000522_120 0.1467538304 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
19 Hb_031862_150 0.1478197284 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_035391_010 0.1480897314 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_000563_460 Hb_000563_460 Hb_002311_490 Hb_002311_490 Hb_000563_460--Hb_002311_490 Hb_000016_220 Hb_000016_220 Hb_000563_460--Hb_000016_220 Hb_011671_290 Hb_011671_290 Hb_000563_460--Hb_011671_290 Hb_009247_020 Hb_009247_020 Hb_000563_460--Hb_009247_020 Hb_073870_020 Hb_073870_020 Hb_000563_460--Hb_073870_020 Hb_000506_140 Hb_000506_140 Hb_000563_460--Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_000230_210 Hb_000230_210 Hb_000016_220--Hb_000230_210 Hb_022768_010 Hb_022768_010 Hb_000016_220--Hb_022768_010 Hb_005618_020 Hb_005618_020 Hb_000016_220--Hb_005618_020 Hb_002849_030 Hb_002849_030 Hb_000016_220--Hb_002849_030 Hb_031862_150 Hb_031862_150 Hb_000016_220--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000016_220--Hb_048538_010 Hb_000610_030 Hb_000610_030 Hb_011671_290--Hb_000610_030 Hb_002572_060 Hb_002572_060 Hb_011671_290--Hb_002572_060 Hb_008931_020 Hb_008931_020 Hb_011671_290--Hb_008931_020 Hb_000959_290 Hb_000959_290 Hb_011671_290--Hb_000959_290 Hb_000414_100 Hb_000414_100 Hb_011671_290--Hb_000414_100 Hb_004994_070 Hb_004994_070 Hb_011671_290--Hb_004994_070 Hb_136027_010 Hb_136027_010 Hb_009247_020--Hb_136027_010 Hb_005568_060 Hb_005568_060 Hb_009247_020--Hb_005568_060 Hb_009189_010 Hb_009189_010 Hb_009247_020--Hb_009189_010 Hb_001411_150 Hb_001411_150 Hb_009247_020--Hb_001411_150 Hb_016404_010 Hb_016404_010 Hb_009247_020--Hb_016404_010 Hb_000347_360 Hb_000347_360 Hb_073870_020--Hb_000347_360 Hb_073870_020--Hb_002849_030 Hb_027214_060 Hb_027214_060 Hb_073870_020--Hb_027214_060 Hb_073870_020--Hb_009189_010 Hb_000227_410 Hb_000227_410 Hb_073870_020--Hb_000227_410 Hb_073870_020--Hb_048538_010 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_000506_140--Hb_016404_010 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5801 1910.49 159.756 194.46 18.2523 23.6726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56726 5.99452 5.8081 8.46326 71.1434

CAGE analysis