Hb_000563_530

Information

Type -
Description -
Location Contig563: 392406-394137
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22470g
description senescence-associated family protein
nr
ID XP_012083970.1
description PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48931: 392275-393305 , PASA_asmbl_48932: 392642-392831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_530 0.0 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
2 Hb_033448_010 0.0959994173 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
3 Hb_000184_120 0.1114534294 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
4 Hb_002200_120 0.1144477424 - - conserved hypothetical protein [Ricinus communis]
5 Hb_077562_040 0.1179800071 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
6 Hb_000369_090 0.122550281 - - -
7 Hb_000366_100 0.1407238511 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
8 Hb_000330_170 0.1420847061 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
9 Hb_004025_030 0.1445162827 - - -
10 Hb_023675_010 0.1499293453 - - -
11 Hb_000603_220 0.1500181089 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
12 Hb_004968_060 0.150648119 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017711_010 0.161668511 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
14 Hb_000189_530 0.1635065691 - - 40S ribosomal protein S24B [Hevea brasiliensis]
15 Hb_027445_060 0.1661816612 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
16 Hb_001488_110 0.1691340151 - - -
17 Hb_008725_200 0.1696133053 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
18 Hb_004223_200 0.1713339105 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
19 Hb_036369_010 0.1718351217 - - -
20 Hb_000122_030 0.177644892 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]

Gene co-expression network

sample Hb_000563_530 Hb_000563_530 Hb_033448_010 Hb_033448_010 Hb_000563_530--Hb_033448_010 Hb_000184_120 Hb_000184_120 Hb_000563_530--Hb_000184_120 Hb_002200_120 Hb_002200_120 Hb_000563_530--Hb_002200_120 Hb_077562_040 Hb_077562_040 Hb_000563_530--Hb_077562_040 Hb_000369_090 Hb_000369_090 Hb_000563_530--Hb_000369_090 Hb_000366_100 Hb_000366_100 Hb_000563_530--Hb_000366_100 Hb_033448_010--Hb_000369_090 Hb_033448_010--Hb_000184_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_033448_010--Hb_000366_100 Hb_000184_120--Hb_077562_040 Hb_000184_120--Hb_002200_120 Hb_004025_030 Hb_004025_030 Hb_000184_120--Hb_004025_030 Hb_000184_120--Hb_000369_090 Hb_000330_170 Hb_000330_170 Hb_002200_120--Hb_000330_170 Hb_002200_120--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_023675_010 Hb_023675_010 Hb_077562_040--Hb_023675_010 Hb_077562_040--Hb_004025_030 Hb_077562_040--Hb_000366_100 Hb_001488_110 Hb_001488_110 Hb_077562_040--Hb_001488_110 Hb_000369_090--Hb_000330_170 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_000366_100--Hb_000189_530 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000617_320 Hb_000617_320 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.421 1.09827 2.25674 12.3501 164.56 386.654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.163 332.809 68.4423 46.9075 4.26669

CAGE analysis