Hb_000563_540

Information

Type -
Description -
Location Contig563: 396482-399779
Sequence    

Annotation

kegg
ID cic:CICLE_v10004153mg
description hypothetical protein
nr
ID XP_012084244.1
description PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2RYS1
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G076700 PE=4 SV=1
Gene Ontology
ID GO:0006996
description fanconi anemia group i protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48933: 398145-398705 , PASA_asmbl_48934: 398308-399076 , PASA_asmbl_48935: 398605-399531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_540 0.0 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
2 Hb_000264_190 0.0659546022 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
3 Hb_010931_100 0.0676754153 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_027751_020 0.0814897833 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
5 Hb_002609_260 0.0825580844 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_005730_020 0.0845276622 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
7 Hb_000571_070 0.0855217188 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
8 Hb_011457_100 0.0973998811 - - ATP binding protein, putative [Ricinus communis]
9 Hb_004545_150 0.0985723881 - - PREDICTED: paramyosin [Jatropha curcas]
10 Hb_005488_100 0.1009571143 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
11 Hb_007178_010 0.1015701985 - - pseudo-hevein [Hevea brasiliensis]
12 Hb_017134_040 0.1016017135 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
13 Hb_000442_030 0.1022858288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009510_030 0.1065284143 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
15 Hb_002890_220 0.1066884255 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
16 Hb_002232_180 0.1081353742 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
17 Hb_002301_020 0.1082028267 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
18 Hb_001017_090 0.1107438315 - - -
19 Hb_000249_110 0.117029348 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
20 Hb_003906_110 0.1188682173 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]

Gene co-expression network

sample Hb_000563_540 Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000563_540--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_000563_540--Hb_010931_100 Hb_027751_020 Hb_027751_020 Hb_000563_540--Hb_027751_020 Hb_002609_260 Hb_002609_260 Hb_000563_540--Hb_002609_260 Hb_005730_020 Hb_005730_020 Hb_000563_540--Hb_005730_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_010931_100--Hb_002609_260 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_005488_100 Hb_005488_100 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_027751_020--Hb_000571_070 Hb_027751_020--Hb_002609_260 Hb_027751_020--Hb_000264_190 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_005730_020--Hb_010931_100 Hb_000571_070--Hb_000264_190 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_000571_070--Hb_010931_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3449 0.0859095 0.174695 1.77706 20.4802 22.8037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3869 13.7285 20.5315 1.44503 0.161047

CAGE analysis