Hb_000563_550

Information

Type -
Description -
Location Contig563: 412103-418104
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01570g
description POPTRDRAFT_725677; MULTIFUNCTIONAL family protein
nr
ID XP_012083968.1
description PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
swissprot
ID Q39659
description Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1
trembl
ID A0A067JVA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18897 PE=3 SV=1
Gene Ontology
ID GO:0005618
description glyoxysomal fatty acid beta-oxidation multifunctional protein mfp-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48936: 412099-414337 , PASA_asmbl_48937: 415966-416313 , PASA_asmbl_48938: 416321-418072
cDNA
(Sanger)
(ID:Location)		 049_K11.ab1: 412099-414337

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_550 0.0 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
2 Hb_005701_010 0.0869423717 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
3 Hb_005043_010 0.0974651356 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_148209_110 0.1116846507 - - putative polyol transported protein 2 [Hevea brasiliensis]
5 Hb_002603_160 0.1121796294 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
6 Hb_002551_020 0.122089618 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
7 Hb_002897_060 0.1221530688 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
8 Hb_000010_470 0.1222007225 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
9 Hb_001329_300 0.1254258583 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
10 Hb_005188_090 0.1257526746 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
11 Hb_000865_060 0.1272060848 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
12 Hb_005000_070 0.1275558282 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
13 Hb_131864_040 0.1308674857 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
14 Hb_000061_300 0.1314840335 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
15 Hb_007416_270 0.1334755286 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
16 Hb_000115_060 0.1370726137 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
17 Hb_003408_030 0.137518684 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_003147_050 0.1389166565 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000622_040 0.1395513682 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
20 Hb_001002_030 0.1409008853 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_550 Hb_000563_550 Hb_005701_010 Hb_005701_010 Hb_000563_550--Hb_005701_010 Hb_005043_010 Hb_005043_010 Hb_000563_550--Hb_005043_010 Hb_148209_110 Hb_148209_110 Hb_000563_550--Hb_148209_110 Hb_002603_160 Hb_002603_160 Hb_000563_550--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_000563_550--Hb_002551_020 Hb_002897_060 Hb_002897_060 Hb_000563_550--Hb_002897_060 Hb_005701_010--Hb_002603_160 Hb_005701_010--Hb_002551_020 Hb_005188_090 Hb_005188_090 Hb_005701_010--Hb_005188_090 Hb_000069_460 Hb_000069_460 Hb_005701_010--Hb_000069_460 Hb_003147_050 Hb_003147_050 Hb_005701_010--Hb_003147_050 Hb_005043_010--Hb_005188_090 Hb_007416_270 Hb_007416_270 Hb_005043_010--Hb_007416_270 Hb_000236_140 Hb_000236_140 Hb_005043_010--Hb_000236_140 Hb_000172_560 Hb_000172_560 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240 Hb_000010_470 Hb_000010_470 Hb_148209_110--Hb_000010_470 Hb_001500_040 Hb_001500_040 Hb_148209_110--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_148209_110--Hb_000602_010 Hb_004678_050 Hb_004678_050 Hb_148209_110--Hb_004678_050 Hb_148209_110--Hb_002551_020 Hb_131864_040 Hb_131864_040 Hb_002603_160--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_002603_160--Hb_003018_190 Hb_006846_110 Hb_006846_110 Hb_002603_160--Hb_006846_110 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_001141_280 Hb_001141_280 Hb_002603_160--Hb_001141_280 Hb_011671_220 Hb_011671_220 Hb_002551_020--Hb_011671_220 Hb_168773_010 Hb_168773_010 Hb_002551_020--Hb_168773_010 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320 Hb_002936_050 Hb_002936_050 Hb_002897_060--Hb_002936_050 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3455 3.94023 2.67123 2.00545 14.5346 14.2696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4005 16.1373 38.0482 11.932 8.2448

CAGE analysis