Hb_000563_570

Information

Type -
Description -
Location Contig563: 427175-428452
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22370g
description hypothetical protein
nr
ID KDP27815.1
description hypothetical protein JCGZ_18895 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48941: 426942-427057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_570 0.0 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
2 Hb_000840_220 0.0574365158 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
3 Hb_001013_060 0.1066018813 - - -
4 Hb_006890_050 0.1181984492 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
5 Hb_000705_070 0.1244436906 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012553_030 0.1259813297 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_001775_060 0.1349365048 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000203_150 0.1365829154 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
9 Hb_004374_040 0.1369238228 - - PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
10 Hb_015884_010 0.1421999528 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
11 Hb_000090_020 0.1450080768 - - acyltransferase, putative [Ricinus communis]
12 Hb_013691_040 0.1461220042 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
13 Hb_007885_120 0.1477116119 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
14 Hb_004757_040 0.1492292185 - - -
15 Hb_003939_090 0.1519139584 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_103632_010 0.152894498 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_003582_010 0.1543970343 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
18 Hb_103541_010 0.1551413708 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
19 Hb_005900_020 0.1565839253 - - -
20 Hb_066350_010 0.1568152971 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]

Gene co-expression network

sample Hb_000563_570 Hb_000563_570 Hb_000840_220 Hb_000840_220 Hb_000563_570--Hb_000840_220 Hb_001013_060 Hb_001013_060 Hb_000563_570--Hb_001013_060 Hb_006890_050 Hb_006890_050 Hb_000563_570--Hb_006890_050 Hb_000705_070 Hb_000705_070 Hb_000563_570--Hb_000705_070 Hb_012553_030 Hb_012553_030 Hb_000563_570--Hb_012553_030 Hb_001775_060 Hb_001775_060 Hb_000563_570--Hb_001775_060 Hb_000840_220--Hb_001013_060 Hb_000840_220--Hb_006890_050 Hb_000840_220--Hb_000705_070 Hb_005900_020 Hb_005900_020 Hb_000840_220--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000840_220--Hb_003582_010 Hb_000203_150 Hb_000203_150 Hb_001013_060--Hb_000203_150 Hb_001610_060 Hb_001610_060 Hb_001013_060--Hb_001610_060 Hb_000720_060 Hb_000720_060 Hb_001013_060--Hb_000720_060 Hb_001013_060--Hb_003582_010 Hb_002639_120 Hb_002639_120 Hb_006890_050--Hb_002639_120 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_000702_040 Hb_000702_040 Hb_006890_050--Hb_000702_040 Hb_001227_010 Hb_001227_010 Hb_006890_050--Hb_001227_010 Hb_001322_010 Hb_001322_010 Hb_000705_070--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_000705_070--Hb_000860_030 Hb_000638_110 Hb_000638_110 Hb_000705_070--Hb_000638_110 Hb_000705_070--Hb_003582_010 Hb_000705_070--Hb_001775_060 Hb_000468_050 Hb_000468_050 Hb_012553_030--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_012553_030--Hb_002592_070 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_103541_010 Hb_103541_010 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_009225_070 Hb_009225_070 Hb_012553_030--Hb_009225_070 Hb_034688_030 Hb_034688_030 Hb_001775_060--Hb_034688_030 Hb_002627_010 Hb_002627_010 Hb_001775_060--Hb_002627_010 Hb_003126_120 Hb_003126_120 Hb_001775_060--Hb_003126_120 Hb_001775_060--Hb_002592_070 Hb_001775_060--Hb_003582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.37616 0.238517 7.19807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.971607 0.491923

CAGE analysis