Hb_000563_590

Information

Type -
Description -
Location Contig563: 434285-435464
Sequence    

Annotation

kegg
ID rcu:RCOM_0681450
description 60S ribosomal protein L22, putative
nr
ID XP_012083960.1
description PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
swissprot
ID Q9M9W1
description 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1
trembl
ID A0A067JVA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18892 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l22-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48943: 434290-435466
cDNA
(Sanger)
(ID:Location)		 018_F07.ab1: 434347-435470 , 026_D23.ab1: 434335-435466

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_590 0.0 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
2 Hb_001454_330 0.0508861982 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
3 Hb_001104_120 0.0681190453 - - -
4 Hb_000089_130 0.0758624742 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
5 Hb_011139_020 0.0820092968 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_001621_180 0.0904366232 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
7 Hb_183963_020 0.0915317055 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
8 Hb_000634_050 0.0915643463 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
9 Hb_009252_130 0.0925326792 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
10 Hb_034585_040 0.0948409621 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
11 Hb_000417_110 0.0949041935 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
12 Hb_007441_180 0.0964702649 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000599_090 0.0990884203 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
14 Hb_009026_050 0.1006370359 - - vacuolar ATPase F subunit [Hevea brasiliensis]
15 Hb_000152_430 0.1010048027 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
16 Hb_001804_040 0.1013741396 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000061_160 0.106545774 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_002234_210 0.1071053531 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
19 Hb_000085_200 0.1071265373 - - ATP synthase subunit H protein [Hevea brasiliensis]
20 Hb_011609_180 0.1073242194 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]

Gene co-expression network

sample Hb_000563_590 Hb_000563_590 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_001454_330--Hb_000089_130 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_001454_330--Hb_011139_020 Hb_001951_110 Hb_001951_110 Hb_001454_330--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_001454_330--Hb_001804_040 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001621_180 Hb_001104_120--Hb_001454_330 Hb_009026_050 Hb_009026_050 Hb_000089_130--Hb_009026_050 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_007441_180 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_025087_010 Hb_025087_010 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
565.806 71.3876 56.1262 59.587 481.442 666.438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
834.112 1257.91 497.993 191.66 37.3623

CAGE analysis