Hb_000563_640

Information

Type -
Description -
Location Contig563: 472098-475140
Sequence    

Annotation

kegg
ID rcu:RCOM_0681300
description Chaperone protein dnaJ, putative
nr
ID XP_012083954.1
description PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
swissprot
ID Q9FH28
description Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2
trembl
ID A0A067JVA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18887 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48953: 472170-475047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_640 0.0 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
2 Hb_009620_050 0.0470217657 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
3 Hb_005321_020 0.0621069781 - - splicing factor-related family protein [Populus trichocarpa]
4 Hb_002615_090 0.0660201483 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
5 Hb_006831_110 0.0670376367 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
6 Hb_000922_370 0.0675495911 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
7 Hb_074969_010 0.0736648397 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
8 Hb_000960_100 0.0739757319 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
9 Hb_002174_020 0.0741214781 - - ring finger protein, putative [Ricinus communis]
10 Hb_005699_090 0.0751076378 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
11 Hb_001213_050 0.0753804159 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
12 Hb_000107_500 0.0754494824 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
13 Hb_002301_080 0.0788151202 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
14 Hb_001454_280 0.0817364637 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
15 Hb_000479_220 0.0824848825 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
16 Hb_007635_030 0.0848231618 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
17 Hb_003531_060 0.0849571711 - - unnamed protein product [Coffea canephora]
18 Hb_003785_040 0.0860659328 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
19 Hb_003609_030 0.0864433187 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
20 Hb_006252_020 0.0867168757 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_640 Hb_000563_640 Hb_009620_050 Hb_009620_050 Hb_000563_640--Hb_009620_050 Hb_005321_020 Hb_005321_020 Hb_000563_640--Hb_005321_020 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_006831_110 Hb_006831_110 Hb_000563_640--Hb_006831_110 Hb_000922_370 Hb_000922_370 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010 Hb_009620_050--Hb_006831_110 Hb_009620_050--Hb_005321_020 Hb_000107_500 Hb_000107_500 Hb_009620_050--Hb_000107_500 Hb_002174_020 Hb_002174_020 Hb_009620_050--Hb_002174_020 Hb_002042_140 Hb_002042_140 Hb_009620_050--Hb_002042_140 Hb_005321_020--Hb_006831_110 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_000283_070 Hb_000283_070 Hb_005321_020--Hb_000283_070 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_006831_110--Hb_002042_140 Hb_006831_110--Hb_000283_070 Hb_006831_110--Hb_000107_500 Hb_003044_020 Hb_003044_020 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_002107_070 Hb_002107_070 Hb_074969_010--Hb_002107_070 Hb_074969_010--Hb_000922_370 Hb_000236_220 Hb_000236_220 Hb_074969_010--Hb_000236_220 Hb_001454_280 Hb_001454_280 Hb_074969_010--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_074969_010--Hb_006252_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5647 18.3865 6.00796 11.33 15.5481 17.1413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44574 7.14452 11.6677 9.47368 10.6112

CAGE analysis