Hb_000565_020

Information

Type -
Description -
Location Contig565: 26730-36807
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08450g
description POPTRDRAFT_249183; hypothetical protein
nr
ID XP_012091162.1
description PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
swissprot
ID Q8VXZ7
description Alpha-galactosidase 3 OS=Arabidopsis thaliana GN=AGAL3 PE=1 SV=1
trembl
ID A0A067JNU2
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_03336 PE=3 SV=1
Gene Ontology
ID GO:0005773
description alpha-galactosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48982: 26683-36866 , PASA_asmbl_48983: 35425-35571
cDNA
(Sanger)
(ID:Location)		 027_C16.ab1: 26683-29300 , 040_C03.ab1: 26683-29558 , 052_K11.ab1: 26683-28790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000565_020 0.0 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
2 Hb_077219_010 0.0989077456 - - conserved hypothetical protein [Ricinus communis]
3 Hb_113216_010 0.1056059698 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_012807_120 0.1061155723 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_002837_070 0.1095203383 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
6 Hb_098315_100 0.1130382433 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_001140_080 0.1131302586 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
8 Hb_000256_270 0.1131909269 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
9 Hb_000320_440 0.1148727364 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
10 Hb_000856_100 0.1151563457 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
11 Hb_000282_150 0.116811227 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
12 Hb_002955_010 0.116877406 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
13 Hb_000466_060 0.1187820612 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_000185_090 0.1190902518 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_001252_170 0.1191487763 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
16 Hb_000365_350 0.1200975926 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
17 Hb_003777_220 0.1204206681 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
18 Hb_006478_070 0.1204900173 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
19 Hb_001846_080 0.122784126 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
20 Hb_000684_180 0.1235946346 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000565_020 Hb_000565_020 Hb_077219_010 Hb_077219_010 Hb_000565_020--Hb_077219_010 Hb_113216_010 Hb_113216_010 Hb_000565_020--Hb_113216_010 Hb_012807_120 Hb_012807_120 Hb_000565_020--Hb_012807_120 Hb_002837_070 Hb_002837_070 Hb_000565_020--Hb_002837_070 Hb_098315_100 Hb_098315_100 Hb_000565_020--Hb_098315_100 Hb_001140_080 Hb_001140_080 Hb_000565_020--Hb_001140_080 Hb_000085_280 Hb_000085_280 Hb_077219_010--Hb_000085_280 Hb_002290_060 Hb_002290_060 Hb_077219_010--Hb_002290_060 Hb_001252_170 Hb_001252_170 Hb_077219_010--Hb_001252_170 Hb_001477_010 Hb_001477_010 Hb_077219_010--Hb_001477_010 Hb_000856_100 Hb_000856_100 Hb_077219_010--Hb_000856_100 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_006478_070 Hb_006478_070 Hb_012807_120--Hb_006478_070 Hb_012807_120--Hb_001140_080 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_010189_010 Hb_010189_010 Hb_002837_070--Hb_010189_010 Hb_002837_070--Hb_174865_050 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_098315_100--Hb_000856_100 Hb_019654_070 Hb_019654_070 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_098315_100--Hb_000365_350 Hb_009193_130 Hb_009193_130 Hb_098315_100--Hb_009193_130 Hb_000155_080 Hb_000155_080 Hb_098315_100--Hb_000155_080 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.849 21.5947 4.1174 24.0555 157.951 203.132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.3795 19.2738 34.7257 18.022 6.03649

CAGE analysis